Browse Element(s) Details


OsAffx.21178.1.S1_x_at

Description tigr:9629.m03156
TID=OsAffx.21178.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3367011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33630Os.47463.1.S1_x_at6/111+18833366..18838199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33630Os.14491.2.S1_x_at4/111+18833366..18838199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33640NANA1+18839680..18842985transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g33650OsAffx.8940.1.S1_at11/111+18847426..18848898hypothetical protein
LOC_Os01g33659NANA1+18853546..18854854NA
LOC_Os01g33670OsAffx.21178.1.S1_x_at11/111+18857174..18858169expressed protein
LOC_Os01g33684Os.32933.1.S1_at11/111+18858748..18867654NB-ARC domain containing protein, expressed
LOC_Os01g33684Os.32933.2.S1_x_at11/111+18858748..18867654NB-ARC domain containing protein, expressed
LOC_Os01g33700Os.40360.1.S1_x_at1/111+18875724..18881551hypothetical protein
LOC_Os01g33710Os.54194.1.S1_at11/111+18882549..18883659expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21178.1.S1_x_at--337--3651Chr01:18857300..18857324 (25 bp)
CTTCTGTTCATGGTTGTGGCTGCCA
LOC_Os01g33670
OsAffx.21178.1.S1_x_at--172--10611Chr01:18857301..18857325 (25 bp)
TTCTGTTCATGGTTGTGGCTGCCAA
LOC_Os01g33670
OsAffx.21178.1.S1_x_at--390--9471Chr01:18857302..18857326 (25 bp)
TCTGTTCATGGTTGTGGCTGCCAAC
LOC_Os01g33670
OsAffx.21178.1.S1_x_at--711--8771Chr01:18857304..18857328 (25 bp)
TGTTCATGGTTGTGGCTGCCAACGG
LOC_Os01g33670
OsAffx.21178.1.S1_x_at--319--6751Chr01:18857305..18857329 (25 bp)
GTTCATGGTTGTGGCTGCCAACGGC
LOC_Os01g33670
OsAffx.21178.1.S1_x_at--1005--7911Chr01:18857311..18857335 (25 bp)
GGTTGTGGCTGCCAACGGCGAGGTC
LOC_Os01g33670
OsAffx.21178.1.S1_x_at--881--4491Chr01:18857354..18857378 (25 bp)
GCCGTGCCGCTCAGGCGAAGCCTGG
LOC_Os01g33670
OsAffx.21178.1.S1_x_at--1126--5391Chr01:18857370..18857394 (25 bp)
GAAGCCTGGGCCTGGGCTGGATGAC
LOC_Os01g33670
OsAffx.21178.1.S1_x_at--64--3891Chr01:18857375..18857399 (25 bp)
CTGGGCCTGGGCTGGATGACCGGCT
LOC_Os01g33670
OsAffx.21178.1.S1_x_at--955--552Chr01:18857438..18857749 (25 bp)
ATCCGTCCTGCTGCAACTGGAGAAG
LOC_Os01g33670
OsAffx.21178.1.S1_x_at--323--7651Chr01:18857774..18857798 (25 bp)
GGGAGAAGTTCATCCACACGCTGCC
LOC_Os01g33670
Target Sequence 
CTTCTGTTCATGGTTGTGGCTGCCAACGGCGAGGTCGGCCATGGTGGCCACGCCGCCGTGCCGCTCAGGCGAAGCCTGGG
CCTGGGCTGGATGACCGGCTTGAAGGGTGGCCCGCCTACCGGCATGCAGCCATCATCAATCCGTCCTGCTGCAACTGGAG
AAGGTGGGAGGCGTTTGAGCAGCGAAGGGGAGAAGTTCATCCACACGCTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21178.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis