Browse Element(s) Details


OsAffx.2191.1.S1_at

Description tigr:9629.m03719
TID=OsAffx.2191.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger C-x8-C-x5-C-x3-H type (and similar), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3910011/11Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39050NANA1+22276787..22283338retrotransposon protein, putative, unclassified
LOC_Os01g39060Os.17577.4.A1_x_at2/111+22286787..22289844expressed protein
LOC_Os01g39070OsAffx.23571.1.S1_at11/111+22292517..22292894LOB domain protein 22, putative
LOC_Os01g39070OsAffx.23571.1.S1_x_at11/111+22292517..22292894LOB domain protein 22, putative
LOC_Os01g39080NANA1+22294831..22295418hypothetical protein
LOC_Os01g39090OsAffx.11383.1.S1_at11/111+22298067..22298312hypothetical protein
LOC_Os01g39100OsAffx.2191.1.S1_at11/111+22300534..22307329Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g39110NANA1+22320771..22323418Zinc finger, C2H2 type family protein, expressed
LOC_Os01g39120OsAffx.23573.1.S1_s_at11/111+22331757..22332214RING zinc finger ankyrin protein, putative
LOC_Os01g39120Os.21180.2.S1_x_at7/111+22331757..22332214RING zinc finger ankyrin protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2191.1.S1_at--185--1951Chr01:22303971..22303995 (25 bp)
ACTGGTGGTCCACATCAGAACTTTG
LOC_Os01g39100
OsAffx.2191.1.S1_at--1113--5451Chr01:22303988..22304012 (25 bp)
GAACTTTGGAAGACCTCAACCCGCA
LOC_Os01g39100
OsAffx.2191.1.S1_at--8--5671Chr01:22304041..22304065 (25 bp)
GACATAGATCAGCTCCACTGTTGGA
LOC_Os01g39100
OsAffx.2191.1.S1_at--620--2451Chr01:22304119..22304143 (25 bp)
AAAATAGTTTGCCTACCACTGCTGC
LOC_Os01g39100
OsAffx.2191.1.S1_at--832--1131Chr01:22304144..22304330 (25 bp)
AGTGCCCAGCTCACATACTTGGATG
LOC_Os01g39100
OsAffx.2191.1.S1_at--1045--10531Chr01:22304334..22304358 (25 bp)
TTCAGTGATGAACCCGTGCCCATGA
LOC_Os01g39100
OsAffx.2191.1.S1_at--958--5051Chr01:22304365..22304389 (25 bp)
GCAGCATTTTTTGTATTCCGCACAC
LOC_Os01g39100
OsAffx.2191.1.S1_at--447--91Chr01:22304379..22304403 (25 bp)
ATTCCGCACACCAGTTTTATTGCTG
LOC_Os01g39100
OsAffx.2191.1.S1_at--1147--6651Chr01:22304420..22304515 (25 bp)
GTTGCAACTGCTGATGTGGACTTAT
LOC_Os01g39100
OsAffx.2191.1.S1_at--1098--5251Chr01:22304575..22304599 (25 bp)
GAATGCACTTCTGTTCAATCCACAG
LOC_Os01g39100
OsAffx.2191.1.S1_at--731--8691Chr01:22306686..22307035 (25 bp)
TGTGCATCCATCAGCTCGTTTTAAG
LOC_Os01g39100
Target Sequence 
ACTGGTGGTCCACATCAGAACTTTGGAAGACCTCAACCCGCAGACGGGAAAAAACTTGGCAAGCACAATGGACATAGATC
AGCTCCACTGTTGGATGAAAAAGACTCATCAAAACAAGCTAATCTACATCCATGTTCAGAACCAAAGAAAAATAGTTTGC
CTACCACTGCTGCAGTGCCCAGCTCACATACTTGGATGTTGTTCAGTGATGAACCCGTGCCCATGAGATTGTGCAGCATT
TTTTGTATTCCGCACACCAGTTTTATTGCTGTAACTCCATCTTGCAAGTTGCAACTGCTGATGTGGACTTATTTTGCAGA
ACTTGGGGCAAATATTTACTGTCAGATTTTGAAGATTGGTAACTATCAAATGAATGCACTTCTGTTCAATCCACAGGCAT
ACAACAGCAAATCACAATTCCTAATCTTCATTAGTTTGCAGCAGCAAGAAGCCAACAGTGCAGCAAAAGGGAGTATGCCC
GTGTGCATCCATCAGCTCGTTTTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2191.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis