Browse Element(s) Details


OsAffx.23035.1.S1_x_at

Description tigr:9629.m00139
TID=OsAffx.23035.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0225011/11NB-ARC domain containing protein
LOC_Os01g0228011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02220NANA1+661579..664356retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g02230NANA1+664849..667778retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g02240OsAffx.25962.1.S1_at9/111+675580..681396transposon protein, putative, Mutator sub-class
LOC_Os01g02250OsAffx.23035.1.S1_x_at11/111+686594..690815NB-ARC domain containing protein
LOC_Os01g02260NANA1+691518..692915retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g02270Os.45831.2.S1_x_at11/111+697335..702472hypothetical protein
LOC_Os01g02270Os.45831.2.S1_at11/111+697335..702472hypothetical protein
LOC_Os01g02270Os.45831.1.S1_x_at9/111+697335..702472hypothetical protein
LOC_Os01g02280Os.45831.2.S1_at11/111+704142..711124NB-ARC domain containing protein
LOC_Os01g02280Os.45831.2.S1_x_at11/111+704142..711124NB-ARC domain containing protein
LOC_Os01g02280OsAffx.23035.1.S1_x_at11/111+704142..711124NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23035.1.S1_x_at--1052--2952Chr01:710524..710548 (25 bp)
AATGGCTTTGCTCTCAAACCTCACA
LOC_Os01g02280
OsAffx.23035.1.S1_x_at--684--4812Chr01:710549..710573 (25 bp)
GCTCTCACCAGTCTACAACTAATAG
LOC_Os01g02280
OsAffx.23035.1.S1_x_at--791--3852Chr01:710624..710648 (25 bp)
CTGAACAAGCTGTGCATCTCTTCTT
LOC_Os01g02280
OsAffx.23035.1.S1_x_at--1125--3012Chr01:710701..710725 (25 bp)
AATGCCTCAAGTTGCCTTCCAATTG
LOC_Os01g02280
OsAffx.23035.1.S1_x_at--278--9592Chr01:710731..710755 (25 bp)
TCTTGTGGTGGACAGCATATCGGCA
LOC_Os01g02280
OsAffx.23035.1.S1_x_at--754--8952Chr01:710824..710848 (25 bp)
TGACAGGGTCTCAAGCTTCAGCGAC
LOC_Os01g02280
OsAffx.23035.1.S1_x_at--288--8892Chr01:710866..710890 (25 bp)
TGAGCTACTTGTCTCCCTCAAAAAA
LOC_Os01g02280
OsAffx.23035.1.S1_x_at--535--812Chr01:710901..710925 (25 bp)
ATGGTTTATGGGTTCTGCAGTCCCT
LOC_Os01g02280
OsAffx.23035.1.S1_x_at--367--7892Chr01:710934..710958 (25 bp)
GGTTACATAAGTTTCCTTCTCTCAC
LOC_Os01g02280
OsAffx.23035.1.S1_x_at--4--9792Chr01:710964..710988 (25 bp)
TAAGTATCAGCCATTGTCCTCAAAT
LOC_Os01g02280
OsAffx.23035.1.S1_x_at--1151--10412Chr01:711042..711066 (25 bp)
TTATCTGCAGCAGCGCACTCGAAGA
LOC_Os01g02280
Target Sequence 
AATGGCTTTGCTCTCAAACCTCACAGCTCTCACCAGTCTACAACTAATAGATTGCTGCAATGTAACAATGGATGGATTTA
ATCCTCTTATCACATCAAATCTGAACAAGCTGTGCATCTCTTCTTGTGGCTCTGCTCCCGCGGACCTACTCGCCGAGATG
GCAAGGACCAAAACAACAATGCCTCAAGTTGCCTTCCAATTGAAAGATCTTGTGGTGGACAGCATATCGGCAGTGCTTAC
TGCTCCCATATGCAGCTTCCTCGCCCCTACTCTTCACGAATTAGGCATCAAAGACGATGTTGACAGGGTCTCAAGCTTCA
GCGACGAACAAGAGGGGGCACTTGAGCTACTTGTCTCCCTCAAAAAACTATCATTTGATGGTTTATGGGTTCTGCAGTCC
CTCCCTGAAGGGTTACATAAGTTTCCTTCTCTCACTGAGCTAAGTATCAGCCATTGTCCTCAAATCCAATCGCTTCCAAA
GAATGGCCTCCCAACTTCCCTAGAAACGTTTTCAGTATTTATCTGCAGCAGCGCACTCGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23035.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis