Browse Element(s) Details


OsAffx.23176.1.S1_at

Description gb:NM_188237.1
DB_XREF= gi:34903557
GEN=P0498B01.17
TID=OsAffx.23176.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0498B01.17 (P0498B01.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0990011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09870NANA1+5124951..5125409expressed protein
LOC_Os01g09880OsAffx.23175.1.S1_x_at11/111+5128418..5129675Harpin-induced protein 1 containing protein, expressed
LOC_Os01g09880Os.39373.1.A1_at3/111+5128418..5129675Harpin-induced protein 1 containing protein, expressed
LOC_Os01g09890Os.4960.1.S1_at11/111+5135279..5137727density-regulated protein DRP1 containing protein, expressed
LOC_Os01g09890Os.4960.1.S1_s_at10/111+5135279..5137727density-regulated protein DRP1 containing protein, expressed
LOC_Os01g09900OsAffx.23176.1.S1_x_at11/111+5145614..5147143Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09900OsAffx.23176.1.S1_at11/111+5145614..5147143Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09900OsAffx.23176.3.S1_x_at1/111+5145614..5147143Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09914NANA1+5155475..5155755NA
LOC_Os01g09930OsAffx.23176.3.S1_x_at11/111+5160093..5165226Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g09930Os.32770.1.S1_x_at4/111+5160093..5165226Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g09930Os.32770.2.S1_x_at3/111+5160093..5165226Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g09930OsAffx.23176.1.S1_x_at3/111+5160093..5165226Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g09940OsAffx.23176.2.S1_at2/111+5168029..5168616hypothetical protein
LOC_Os01g09940OsAffx.23176.1.S1_x_at1/111+5168029..5168616hypothetical protein
LOC_Os01g09940OsAffx.23176.3.S1_x_at1/111+5168029..5168616hypothetical protein
LOC_Os01g09950OsAffx.23177.2.S1_s_at11/111+5170357..5171074hypothetical protein
LOC_Os01g09950OsAffx.23177.1.S1_at8/111+5170357..5171074hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23176.1.S1_at--103--2771Chr01:5146560..5146584 (25 bp)
AAGACGGCCATGTCAGCGCTGGCCA
LOC_Os01g09900
OsAffx.23176.1.S1_at--1104--1391Chr01:5146561..5146585 (25 bp)
AGACGGCCATGTCAGCGCTGGCCAA
LOC_Os01g09900
OsAffx.23176.1.S1_at--299--4571Chr01:5146575..5146599 (25 bp)
GCGCTGGCCAAGATGCACATGGAGA
LOC_Os01g09900
OsAffx.23176.1.S1_at--941--4131Chr01:5146576..5146600 (25 bp)
CGCTGGCCAAGATGCACATGGAGAC
LOC_Os01g09900
OsAffx.23176.1.S1_at--509--4711Chr01:5146577..5146601 (25 bp)
GCTGGCCAAGATGCACATGGAGACG
LOC_Os01g09900
OsAffx.23176.1.S1_at--1162--3911Chr01:5146578..5146602 (25 bp)
CTGGCCAAGATGCACATGGAGACGA
LOC_Os01g09900
OsAffx.23176.1.S1_at--732--8451Chr01:5146579..5146603 (25 bp)
TGGCCAAGATGCACATGGAGACGAC
LOC_Os01g09900
OsAffx.23176.1.S1_at--673--4391Chr01:5146581..5146605 (25 bp)
GCCAAGATGCACATGGAGACGACGT
LOC_Os01g09900
OsAffx.23176.1.S1_at--490--3231Chr01:5146583..5146607 (25 bp)
CAAGATGCACATGGAGACGACGTAC
LOC_Os01g09900
OsAffx.23176.1.S1_at--1068--2791Chr01:5146584..5146608 (25 bp)
AAGATGCACATGGAGACGACGTACA
LOC_Os01g09900
OsAffx.23176.1.S1_at--497--1391Chr01:5146597..5146621 (25 bp)
AGACGACGTACAGGCGCCGCCAGTA
LOC_Os01g09900
Target Sequence
AAGACGGCCATGTCAGCGCTGGCCAAGATGCACATGGAGACGACGTACAGGCGCCGCCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis