Browse Element(s) Details


OsAffx.23176.3.S1_x_at

Description tigr:9629.m00944
TID=OsAffx.23176.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Helix-loop-helix DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0993011/11Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g099905/11Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os12g179302/11hypothetical protein
LOC_Os08g396801/11expressed protein
LOC_Os01g099401/11hypothetical protein
LOC_Os01g099001/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09890Os.4960.1.S1_at11/111+5135279..5137727density-regulated protein DRP1 containing protein, expressed
LOC_Os01g09890Os.4960.1.S1_s_at10/111+5135279..5137727density-regulated protein DRP1 containing protein, expressed
LOC_Os01g09900OsAffx.23176.1.S1_x_at11/111+5145614..5147143Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09900OsAffx.23176.1.S1_at11/111+5145614..5147143Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09900OsAffx.23176.3.S1_x_at1/111+5145614..5147143Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09914NANA1+5155475..5155755NA
LOC_Os01g09930OsAffx.23176.3.S1_x_at11/111+5160093..5165226Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g09930Os.32770.1.S1_x_at4/111+5160093..5165226Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g09930Os.32770.2.S1_x_at3/111+5160093..5165226Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g09930OsAffx.23176.1.S1_x_at3/111+5160093..5165226Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g09940OsAffx.23176.2.S1_at2/111+5168029..5168616hypothetical protein
LOC_Os01g09940OsAffx.23176.1.S1_x_at1/111+5168029..5168616hypothetical protein
LOC_Os01g09940OsAffx.23176.3.S1_x_at1/111+5168029..5168616hypothetical protein
LOC_Os01g09950OsAffx.23177.2.S1_s_at11/111+5170357..5171074hypothetical protein
LOC_Os01g09950OsAffx.23177.1.S1_at8/111+5170357..5171074hypothetical protein
LOC_Os01g09960Os.41695.5.S1_x_at8/111+5173048..5180416SWIM zinc finger family protein
LOC_Os01g09960Os.41695.3.S1_x_at6/111+5173048..5180416SWIM zinc finger family protein
LOC_Os01g09960Os.41695.2.S1_x_at5/111+5173048..5180416SWIM zinc finger family protein
LOC_Os01g09960Os.41695.4.S1_x_at1/111+5173048..5180416SWIM zinc finger family protein
LOC_Os01g09970NANA1+5187729..5188217hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23176.3.S1_x_at--183--8371Chr01:5163371..5163395 (25 bp)
GGCGTCGATACTGATCAGGGCAAGA
LOC_Os01g09930
OsAffx.23176.3.S1_x_at--127--5951Chr01:5163396..5163420 (25 bp)
GAGCACATAAAGTCTCTCGAGTCAA
LOC_Os01g09930
OsAffx.23176.3.S1_x_at--384--3774Chr01:5163409..5163433 (25 bp)
CTCTCGAGTCAAAGCTGTCGGAGCT
LOC_Os01g09930
OsAffx.23176.3.S1_x_at--574--1351Chr01:5163620..5163644 (25 bp)
AGAGACTTGTTGCACGCTCAACGTG
LOC_Os01g09930
OsAffx.23176.3.S1_x_at--1055--1492Chr01:5200453..5200477 (25 bp)
AGCACGACGGACGTTGTGCTCCGGA
LOC_Os01g09990
OsAffx.23176.3.S1_x_at--1034--9272Chr01:5200472..5200496 (25 bp)
TCCGGACGCTGCAGTGCCTGAGAGA
LOC_Os01g09990
OsAffx.23176.3.S1_x_at--343--1692Chr01:5200516..5200540 (25 bp)
AGCCTCGTGGCGATGAGCACCAGCG
LOC_Os01g09990
OsAffx.23176.3.S1_x_at--902--7332Chr01:5200565..5200589 (25 bp)
GTGCAAACCTAACATTACAGCTCAA
LOC_Os01g09990
OsAffx.23176.3.S1_x_at--861--48316Chr12:18014110..18014129 (20 bp)
GCTCAAGAGCCCAACATATGGCAGA
NONE
OsAffx.23176.3.S1_x_at--927--10097Chr08:16742878..16742902 (25 bp)
TATGGCAGATGCTCCTACAAGTATG
NONE
OsAffx.23176.3.S1_x_at--491--10731Chr01:5164392..5164416 (25 bp)
TTGTCAACCGTCAAAAGCCAACCAT
LOC_Os01g09930
Target Sequence 
GGCGTCGATACTGATCAGGGCAAGAGAGCACATAAAGTCTCTCGAGTCAAAGCTGTCGGAGCTGGAGGAGAAGAACCGGG
AGCTGGAGGCGAGGCTAGCCAGCCGCCCCGCCGCCAAGAACGACAAAGGCGAGACGGCGGCGGCGGAAGCCGGCGACGAG
ACGAAGCGAGAGGACCTAGTAGAGATCGAGGTGACGACGACGAGCGGCGGCAGCGGAGCGGCGGCTGCGGCGGCGACAGG
AGGAGATCAAGAGACTTGTTGCACGCTCAACGTGGACTTGCGCGGCGGCGGCGGCGGAGGCATGAGCACGACGGACGTTG
TGCTCCGGACGCTGCAGTGCCTGAGAGAGCAGATCGGCGACGGCGCCAGCCTCGTGGCGATGAGCACCAGCGCCGGCTCC
GGCGGCCGCCCTCCTAGTGCAAACCTAACATTACAGCTCAAGAGCCCAACATATGGCAGATGCTCCTACAAGTATGAGTT
TACTCTTTTTCTTGTCAACCGTCAAAAGCCAACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23176.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis