Browse Element(s) Details


OsAffx.23177.1.S1_at

Description gb:NM_188242.1
DB_XREF= gi:34903567
GEN=P0498B01.22
TID=OsAffx.23177.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0498B01.22 (P0498B01.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g099508/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09900OsAffx.23176.1.S1_x_at11/111+5145614..5147143Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09900OsAffx.23176.1.S1_at11/111+5145614..5147143Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09900OsAffx.23176.3.S1_x_at1/111+5145614..5147143Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09914NANA1+5155475..5155755NA
LOC_Os01g09930OsAffx.23176.3.S1_x_at11/111+5160093..5165226Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g09930Os.32770.1.S1_x_at4/111+5160093..5165226Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g09930Os.32770.2.S1_x_at3/111+5160093..5165226Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g09930OsAffx.23176.1.S1_x_at3/111+5160093..5165226Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g09940OsAffx.23176.2.S1_at2/111+5168029..5168616hypothetical protein
LOC_Os01g09940OsAffx.23176.1.S1_x_at1/111+5168029..5168616hypothetical protein
LOC_Os01g09940OsAffx.23176.3.S1_x_at1/111+5168029..5168616hypothetical protein
LOC_Os01g09950OsAffx.23177.2.S1_s_at11/111+5170357..5171074hypothetical protein
LOC_Os01g09950OsAffx.23177.1.S1_at8/111+5170357..5171074hypothetical protein
LOC_Os01g09960Os.41695.5.S1_x_at8/111+5173048..5180416SWIM zinc finger family protein
LOC_Os01g09960Os.41695.3.S1_x_at6/111+5173048..5180416SWIM zinc finger family protein
LOC_Os01g09960Os.41695.2.S1_x_at5/111+5173048..5180416SWIM zinc finger family protein
LOC_Os01g09960Os.41695.4.S1_x_at1/111+5173048..5180416SWIM zinc finger family protein
LOC_Os01g09970NANA1+5187729..5188217hypothetical protein
LOC_Os01g09980OsAffx.1975.1.S1_at11/111+5192520..5193754hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23177.1.S1_at--52--3251Chr01:5171261..5171285 (25 bp)
CAACCCGACCCATCAATCATAAAAG
NONE
OsAffx.23177.1.S1_at--710--8211Chr01:5171237..5171261 (25 bp)
GGAATAAGTCCATCTTACCTCACTC
NONE
OsAffx.23177.1.S1_at--696--5713Chr05:10868029..10868073 (25 bp)
GACTCCTCCGGTGGTTTTGAAAGCG
NONE
OsAffx.23177.1.S1_at--1156--2171Chr01:5170884..5170908 (25 bp)
ACACTGGCGCCAGTTGATATGAGGT
LOC_Os01g09950
OsAffx.23177.1.S1_at--164--791Chr01:5170846..5170870 (25 bp)
ATGTGGGCCCCAATTGCCAACTCAG
LOC_Os01g09950
OsAffx.23177.1.S1_at--1041--2531Chr01:5170828..5170852 (25 bp)
AACTCAGCGAGTCAACCGCGGTCTA
LOC_Os01g09950
OsAffx.23177.1.S1_at--249--2611Chr01:5170820..5170839 (20 bp)
AACCGCGGTCTAGCATCCATAAAGG
LOC_Os01g09950
OsAffx.23177.1.S1_at--205--5551Chr01:5170553..5170577 (25 bp)
GAAACTACATCCAATTCGAATCCGA
LOC_Os01g09950
OsAffx.23177.1.S1_at--531--5371Chr01:5170525..5170549 (25 bp)
GAAGAATCAAATCCATTGCGTGTAG
LOC_Os01g09950
OsAffx.23177.1.S1_at--905--3151Chr01:5170485..5170509 (25 bp)
AATTCGCCGGAGATCTCTGGTTGTT
LOC_Os01g09950
OsAffx.23177.1.S1_at--1057--8471Chr01:5170468..5170492 (25 bp)
TGGTTGTTGTTTCCCCGGACCAGCT
LOC_Os01g09950
Target Sequence 
CAACCCGACCCATCAATCATAAAAGGAATAAGTCCATCTTACCTCACTCATCTCTTTCACTTCGCCGAATAACATCCCTC
AACCGCAAAACCGGCTATAATACCTCCCCCATCTCCGTAAACCGGTGCAAATCGACTCCTCCGGTGGTTTTGAAAGCGGT
TTATGCTGATATGGCAGGGATTGAAGATAGAAGTGGGTCCCACATCCGCACGCACGGAGGCCGATTCGGCCGGCTTCATC
CAACACTGGCGCCAGTTGATATGAGGTGGAAGTCGCTGACATGTGGGCCCCAATTGCCAACTCAGCGAGTCAACCGCGGT
CTAGCATCCATAAAGGGGGAAACTACATCCAATTCGAATCCGATAAGAAGAATCAAATCCATTGCGTGTAGAAATGGAGA
GGAACGAATTCGCCGGAGATCTCTGGTTGTTGTTTCCCCGGACCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23177.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis