Browse Element(s) Details


OsAffx.23177.2.S1_s_at

Description tigr:9629.m00946
TID=OsAffx.23177.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0995011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09900OsAffx.23176.1.S1_x_at11/111+5145614..5147143Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09900OsAffx.23176.1.S1_at11/111+5145614..5147143Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09900OsAffx.23176.3.S1_x_at1/111+5145614..5147143Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09914NANA1+5155475..5155755NA
LOC_Os01g09930OsAffx.23176.3.S1_x_at11/111+5160093..5165226Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g09930Os.32770.1.S1_x_at4/111+5160093..5165226Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g09930Os.32770.2.S1_x_at3/111+5160093..5165226Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g09930OsAffx.23176.1.S1_x_at3/111+5160093..5165226Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g09940OsAffx.23176.2.S1_at2/111+5168029..5168616hypothetical protein
LOC_Os01g09940OsAffx.23176.1.S1_x_at1/111+5168029..5168616hypothetical protein
LOC_Os01g09940OsAffx.23176.3.S1_x_at1/111+5168029..5168616hypothetical protein
LOC_Os01g09950OsAffx.23177.2.S1_s_at11/111+5170357..5171074hypothetical protein
LOC_Os01g09950OsAffx.23177.1.S1_at8/111+5170357..5171074hypothetical protein
LOC_Os01g09960Os.41695.5.S1_x_at8/111+5173048..5180416SWIM zinc finger family protein
LOC_Os01g09960Os.41695.3.S1_x_at6/111+5173048..5180416SWIM zinc finger family protein
LOC_Os01g09960Os.41695.2.S1_x_at5/111+5173048..5180416SWIM zinc finger family protein
LOC_Os01g09960Os.41695.4.S1_x_at1/111+5173048..5180416SWIM zinc finger family protein
LOC_Os01g09970NANA1+5187729..5188217hypothetical protein
LOC_Os01g09980OsAffx.1975.1.S1_at11/111+5192520..5193754hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23177.2.S1_s_at--135--3911Chr01:5170445..5170469 (25 bp)
CTGGTGCATTTCTCCCTGATGGGAA
LOC_Os01g09950
OsAffx.23177.2.S1_s_at--790--8591Chr01:5170444..5170468 (25 bp)
TGGTGCATTTCTCCCTGATGGGAAG
LOC_Os01g09950
OsAffx.23177.2.S1_s_at--418--7331Chr01:5170442..5170466 (25 bp)
GTGCATTTCTCCCTGATGGGAAGAG
LOC_Os01g09950
OsAffx.23177.2.S1_s_at--202--9071Chr01:5170441..5170465 (25 bp)
TGCATTTCTCCCTGATGGGAAGAGA
LOC_Os01g09950
OsAffx.23177.2.S1_s_at--704--10271Chr01:5170437..5170461 (25 bp)
TTTCTCCCTGATGGGAAGAGAAGCC
LOC_Os01g09950
OsAffx.23177.2.S1_s_at--139--5431Chr01:5170418..5170442 (25 bp)
GAAGCCAGCTCGGTTACAAGCCATG
LOC_Os01g09950
OsAffx.23177.2.S1_s_at--360--2651Chr01:5170417..5170441 (25 bp)
AAGCCAGCTCGGTTACAAGCCATGG
LOC_Os01g09950
OsAffx.23177.2.S1_s_at--611--4411Chr01:5170415..5170439 (25 bp)
GCCAGCTCGGTTACAAGCCATGGCT
LOC_Os01g09950
OsAffx.23177.2.S1_s_at--564--1591Chr01:5170412..5170436 (25 bp)
AGCTCGGTTACAAGCCATGGCTCCG
LOC_Os01g09950
OsAffx.23177.2.S1_s_at--521--9431Chr01:5170409..5170433 (25 bp)
TCGGTTACAAGCCATGGCTCCGCAC
LOC_Os01g09950
OsAffx.23177.2.S1_s_at--1152--7871Chr01:5170407..5170431 (25 bp)
GGTTACAAGCCATGGCTCCGCACCG
LOC_Os01g09950
Target Sequence
CTGGTGCATTTCTCCCTGATGGGAAGAGAAGCCAGCTCGGTTACAAGCCATGGCTCCGCACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23177.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis