Browse Element(s) Details


OsAffx.23985.1.S1_at

Description tigr:9629.m06917
TID=OsAffx.23985.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Auxin responsive protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7005011/11Auxin responsive protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70020Os.18596.1.S1_at11/111+40827996..40834366expressed protein
LOC_Os01g70020Os.50767.1.S1_x_at11/111+40827996..40834366expressed protein
LOC_Os01g70030NANA1+40840606..40845440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g70040NANA1+40848049..40851294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g70050OsAffx.23985.1.S1_at11/111+40853440..40853961Auxin responsive protein
LOC_Os01g70060OsAffx.1108.1.S1_at10/111+40867830..40881600expressed protein
LOC_Os01g70060Os.7001.1.S1_at10/111+40867830..40881600expressed protein
LOC_Os01g70060Os.46177.1.S1_x_at8/111+40867830..40881600expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23985.1.S1_at--881--2771Chr01:40853892..40853916 (25 bp)
AAGAGCCTGATATCGAGGACGCTGG
LOC_Os01g70050
OsAffx.23985.1.S1_at--1148--1671Chr01:40853889..40853913 (25 bp)
AGCCTGATATCGAGGACGCTGGAGC
LOC_Os01g70050
OsAffx.23985.1.S1_at--128--5891Chr01:40853868..40853892 (25 bp)
GAGCGGTGCAAGTCCGGGCTGAGCA
LOC_Os01g70050
OsAffx.23985.1.S1_at--33--7711Chr01:40853812..40853836 (25 bp)
GGTGGCCGGGTGCTTCTCGGTGTAC
LOC_Os01g70050
OsAffx.23985.1.S1_at--577--4251Chr01:40853807..40853831 (25 bp)
CCGGGTGCTTCTCGGTGTACGTGGG
LOC_Os01g70050
OsAffx.23985.1.S1_at--177--9431Chr01:40853765..40853789 (25 bp)
TCGTGGTGCGCACCGAGTACGCCAA
LOC_Os01g70050
OsAffx.23985.1.S1_at--726--4651Chr01:40853556..40853580 (25 bp)
GCGTCGCCGATATGCGGCCTCCCGA
LOC_Os01g70050
OsAffx.23985.1.S1_at--747--4851Chr01:40853498..40853522 (25 bp)
GCTACCGCATGCTGAGCCCGGCGAG
LOC_Os01g70050
OsAffx.23985.1.S1_at--640--1791Chr01:40853495..40853519 (25 bp)
ACCGCATGCTGAGCCCGGCGAGGAT
LOC_Os01g70050
OsAffx.23985.1.S1_at--789--4611Chr01:40853478..40853502 (25 bp)
GCGAGGATGACGTCGATCTTGTCGA
LOC_Os01g70050
OsAffx.23985.1.S1_at--380--7991Chr01:40853474..40853498 (25 bp)
GGATGACGTCGATCTTGTCGAGGTC
LOC_Os01g70050
Target Sequence 
AAGAGCCTGATATCGAGGACGCTGGAGCGGTGCAAGTCCGGGCTGAGCAGCGGCGGCGGCGGCAGGTCGGCGGCGGCGCC
GGTGGCCGGGTGCTTCTCGGTGTACGTGGGGCCGGAGCGGGAGCGGTTCGTGGTGCGCACCGAGTACGCCAACCACCCGC
TGTTCCGGCGGCTGCTCGACGACGCCGAGCGCGAGTACGGCTACGCGGCGCAGGGGCCCCTCGCGCTGCCGTGCGCCGTC
GACGCGTTCCTCGACGTGCTCTGGCAGATGGAGCGCGACGGCTGCGGCGGCGGCGGCGACGACGACGACGACCTCTCCAT
CGGCGGCGGCGGCGCGGCGTCGCCGATATGCGGCCTCCCGAGCTGCGGCAGCAAGGGCCGCGCGGCGGCCGCCGGCTACC
GCATGCTGAGCCCGGCGAGGATGACGTCGATCTTGTCGAGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23985.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis