Browse Element(s) Details


OsAffx.24216.1.S1_at

Description tigr:9630.m01168
TID=OsAffx.24216.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1283010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12810NANA2+6726340..6733254MAP3K delta-1 protein kinase, putative, expressed
LOC_Os02g12820OsAffx.12011.1.S1_at11/112+6747298..6749884Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g12830OsAffx.24216.1.S1_at10/112+6751348..6752533hypothetical protein
LOC_Os02g12840OsAffx.24217.1.S1_at11/112+6769015..6778174DEAD/DEAH box helicase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24216.1.S1_at--405--7631NONE
GGGACTTTTAGAAATGAGCCACCAG
NONE
OsAffx.24216.1.S1_at--705--691Chr02:6752441..6752464 (24 bp)
ATGAGCCACCAGAAGTCTGCACGAC
LOC_Os02g12830
OsAffx.24216.1.S1_at--353--2851Chr02:6752429..6752453 (25 bp)
AAGTCTGCACGACTGCAATGAAGGC
LOC_Os02g12830
OsAffx.24216.1.S1_at--454--7571Chr02:6752397..6752421 (25 bp)
GGGCTTCACCACATTGAGTTGGGCA
LOC_Os02g12830
OsAffx.24216.1.S1_at--1044--31Chr02:6752385..6752409 (25 bp)
ATTGAGTTGGGCACCGTCTGTGGCC
LOC_Os02g12830
OsAffx.24216.1.S1_at--114--1791Chr02:6752373..6752397 (25 bp)
ACCGTCTGTGGCCTTGAAGGCTTTA
LOC_Os02g12830
OsAffx.24216.1.S1_at--25--2931Chr02:6752357..6752381 (25 bp)
AAGGCTTTAAGAGGACACTGCCATC
LOC_Os02g12830
OsAffx.24216.1.S1_at--944--9191Chr02:6752339..6752363 (25 bp)
TGCCATCGGTGGCTAGATCTAGCGC
LOC_Os02g12830
OsAffx.24216.1.S1_at--1002--9991Chr02:6752320..6752344 (25 bp)
TAGCGCTGCTATAGCTAGATCCGAT
LOC_Os02g12830
OsAffx.24216.1.S1_at--1049--291Chr02:6752310..6752334 (25 bp)
ATAGCTAGATCCGATGCCTCTGTGG
LOC_Os02g12830
OsAffx.24216.1.S1_at--324--591Chr02:6752297..6752321 (25 bp)
ATGCCTCTGTGGCAGATCTAGCCAA
LOC_Os02g12830
Target Sequence 
GGGACTTTTAGAAATGAGCCACCAGAAGTCTGCACGACTGCAATGAAGGCAGCAGTGGGGCTTCACCACATTGAGTTGGG
CACCGTCTGTGGCCTTGAAGGCTTTAAGAGGACACTGCCATCGGTGGCTAGATCTAGCGCTGCTATAGCTAGATCCGATG
CCTCTGTGGCAGATCTAGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24216.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis