Browse Element(s) Details


OsAffx.24392.1.S1_at

Description tigr:9630.m02197
TID=OsAffx.24392.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2280010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g22780Os.9114.1.S1_at11/112+13560751..13565934T-complex protein 1, delta subunit, putative, expressed
LOC_Os02g22790OsAffx.22699.1.S1_x_at1/112+13572273..13578057retrotransposon protein, putative, unclassified
LOC_Os02g22800OsAffx.24392.1.S1_at10/112+13582299..13588851hypothetical protein
LOC_Os02g22810OsAffx.21779.3.S1_at3/112+13591783..13593150retrotransposon protein, putative, unclassified
LOC_Os02g22820NANA2+13606025..13607504expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24392.1.S1_at--401--1311Chr02:13585558..13585582 (25 bp)
AGATGTTTGCAGTCAGGCAGAGGCT
LOC_Os02g22800
OsAffx.24392.1.S1_at--528--931Chr02:13585544..13585568 (25 bp)
AGGCAGAGGCTATTCGCGGCCATAA
LOC_Os02g22800
OsAffx.24392.1.S1_at--801--8431Chr02:13585527..13585551 (25 bp)
GGCCATAACCGTGGTCCTCCAAATG
LOC_Os02g22800
OsAffx.24392.1.S1_at--1137--5651Chr02:13585486..13585510 (25 bp)
GACATGGTCGCTGTGCCATTGTAGG
LOC_Os02g22800
OsAffx.24392.1.S1_at--41--4431Chr02:13585472..13585496 (25 bp)
GCCATTGTAGGTGCCCTTACTGGCC
LOC_Os02g22800
OsAffx.24392.1.S1_at--55--9371Chr02:13585436..13585455 (20 bp)
TCGACATGTGTAGAGGTCAGACCTC
LOC_Os02g22800
OsAffx.24392.1.S1_at--823--3851Chr02:13584155..13584179 (25 bp)
CTGTTCTCGGAAGCTTCTTCAGTGG
LOC_Os02g22800
OsAffx.24392.1.S1_at--956--4491Chr02:13583814..13583838 (25 bp)
GCCGTTGTAGGTGCCCTTACTGGCC
LOC_Os02g22800
OsAffx.24392.1.S1_at--421--2111NONE
ACATGTGTAGTGGTCAGTGAGAGCT
NONE
OsAffx.24392.1.S1_at--326--9652Chr02:13582630..13582652 (23 bp)
TCAGTGAGAGCTACGCGACATGCAG
LOC_Os02g22800
OsAffx.24392.1.S1_at--392--3511Chr02:13582602..13582626 (25 bp)
CATGTTCTCAGAAGCTTCTTCAGTC
LOC_Os02g22800
Target Sequence 
AGATGTTTGCAGTCAGGCAGAGGCTATTCGCGGCCATAACCGTGGTCCTCCAAATGCCTCCTTACCGGCTTTGACATGGT
CGCTGTGCCATTGTAGGTGCCCTTACTGGCCTCCGATTGCACGTGTATCGACATGTGTAGAGGTCAGACCTCCCACAGGG
TCCGTGCAGTCAAGAGTGAAAAGCTCTGCTGAGCTAGAGGAGGAGATGCTAGCCAACATCCCAAAATTCAGAGCACGACC
ATTTAACAAAAAAGAGTTTCATCTTAAAACGATGGTGAGAGCTACGCGACATGCAGACACCTGTTCTCGGAAGCTTCTTC
AGTGGGGACTGTCAGGAGCGAGAGCAGGTGAAAAGTTCAACCCCTTACCGGCTTTGCCATGGTCGCTGCGCCGTTGTAGG
TGCCCTTACTGGCCTCCGATTGCACGTGTATCGACATGTGTAGTGGTCAGTGAGAGCTACGCGACATGCAGACACATGTT
CTCAGAAGCTTCTTCAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24392.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis