Browse Element(s) Details


OsAffx.24517.1.S1_at

Description tigr:9630.m02969
TID=OsAffx.24517.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3095011/11hypothetical protein
LOC_Os11g067102/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30920NANA2+18463256..18464808hypothetical protein
LOC_Os02g30930OsAffx.12300.1.S1_at11/112+18468625..18470220hypothetical protein
LOC_Os02g30940OsAffx.2815.1.S1_at10/112+18473317..18475479hypothetical protein
LOC_Os02g30950OsAffx.24517.1.S1_at11/112+18484715..18485941hypothetical protein
LOC_Os02g30950OsAffx.18711.1.S1_at1/112+18484715..18485941hypothetical protein
LOC_Os02g30960OsAffx.24518.2.S1_x_at11/112+18489698..18492227hAT family dimerisation domain containing protein
LOC_Os02g30960OsAffx.19258.2.S1_x_at3/112+18489698..18492227hAT family dimerisation domain containing protein
LOC_Os02g30974Os.8606.1.S1_at11/112+18495365..18503763expressed protein
LOC_Os02g30990NANA2+18504922..18508694retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g31000Os.56299.1.S1_at4/112+18509668..18512734retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24517.1.S1_at--1032--1592Chr02:18484745..18484769 (25 bp)
AGCTGCTTAGCACGCACAGCACCTG
LOC_Os02g30950
OsAffx.24517.1.S1_at--918--3832Chr02:18484747..18484771 (25 bp)
CTGCTTAGCACGCACAGCACCTGGT
LOC_Os02g30950
OsAffx.24517.1.S1_at--231--1511Chr02:18484762..18484786 (25 bp)
AGCACCTGGTGCTCGTCTCGCAAGG
LOC_Os02g30950
OsAffx.24517.1.S1_at--50--1771Chr02:18484765..18484789 (25 bp)
ACCTGGTGCTCGTCTCGCAAGGAGG
LOC_Os02g30950
OsAffx.24517.1.S1_at--776--3211Chr02:18484782..18484806 (25 bp)
CAAGGAGGCGCGACGATGATTCAGA
LOC_Os02g30950
OsAffx.24517.1.S1_at--371--8011Chr02:18484785..18484809 (25 bp)
GGAGGCGCGACGATGATTCAGACCT
LOC_Os02g30950
OsAffx.24517.1.S1_at--1045--8391Chr02:18484788..18484812 (25 bp)
GGCGCGACGATGATTCAGACCTCGT
LOC_Os02g30950
OsAffx.24517.1.S1_at--447--6291Chr02:18484796..18484820 (25 bp)
GATGATTCAGACCTCGTCGACCGGC
LOC_Os02g30950
OsAffx.24517.1.S1_at--927--1771Chr02:18484815..18484935 (25 bp)
ACCGGCGGCATACATCATGCGTATT
LOC_Os02g30950
OsAffx.24517.1.S1_at--913--4691Chr02:18484819..18484939 (25 bp)
GCGGCATACATCATGCGTATTGGTT
LOC_Os02g30950
OsAffx.24517.1.S1_at--547--2091Chr02:18484926..18484946 (21 bp)
ACATCATGCGTATTGGTTGATTTGC
LOC_Os02g30950
Target Sequence 
AGCTGCTTAGCACGCACAGCACCTGGTGCTCGTCTCGCAAGGAGGCGCGACGATGATTCAGACCTCGTCGACCGGCGGCA
TACATCATGCGTATTGGTTGATTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24517.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis