Browse Element(s) Details


OsAffx.24649.1.S1_at

Description tigr:9630.m03772
TID=OsAffx.24649.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cyclin, N-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3922010/11transposon protein, putative, unclassified
LOC_Os02g162405/11transposon protein, putative, unclassified
LOC_Os12g180102/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39170OsAffx.24644.1.S1_at11/112+23656750..23658590GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39180Os.10189.1.S1_at10/112+23658882..23661264expressed protein
LOC_Os02g39190OsAffx.24646.1.S1_at11/112+23667975..23670671hypothetical protein
LOC_Os02g39200Os.21852.1.S1_at11/112+23671476..23676789nucleotide-sugar transporter family protein, putative, expressed
LOC_Os02g39210OsAffx.2913.1.S1_at11/112+23677452..23678525hypothetical protein
LOC_Os02g39220OsAffx.24649.1.S1_at10/112+23682716..23692312transposon protein, putative, unclassified
LOC_Os02g39220OsAffx.24649.3.S1_at10/112+23682716..23692312transposon protein, putative, unclassified
LOC_Os02g39230OsAffx.24649.4.S1_at11/112+23694091..23695761Cyclin, C-terminal domain containing protein
LOC_Os02g39230OsAffx.24649.2.S1_x_at1/112+23694091..23695761Cyclin, C-terminal domain containing protein
LOC_Os02g39230OsAffx.24649.5.S1_x_at1/112+23694091..23695761Cyclin, C-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.5.S1_s_at11/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.5.S1_x_at11/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.2.S1_x_at1/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39250OsAffx.24648.1.S1_at11/112+23701742..23703321hypothetical protein
LOC_Os02g39260Os.55732.1.S1_at11/112+23705021..23706577Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g39270OsAffx.12407.1.S1_at11/112+23708748..23710071hypothetical protein
LOC_Os02g39280OsAffx.12408.1.S1_at11/112+23714568..23720311C2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24649.1.S1_at--325--6473Chr02:23689946..23689970 (25 bp)
GATAAGGTCCATGATCCTATGGAAA
LOC_Os02g39220
OsAffx.24649.1.S1_at--895--5593Chr02:23689967..23689991 (25 bp)
GAAATTGTGCCTAAAGGAGCTCCAA
LOC_Os02g39220
OsAffx.24649.1.S1_at--622--972Chr02:23689981..23690005 (25 bp)
AGGAGCTCCAACAAAAAGACTACGA
LOC_Os02g39220
OsAffx.24649.1.S1_at--923--3272Chr02:23689992..23690016 (25 bp)
CAAAAAGACTACGAGGATTCATGGA
LOC_Os02g39220
OsAffx.24649.1.S1_at--912--4631NONE
GCGTTGTGGGATAGCTGAAGCTCCA
NONE
OsAffx.24649.1.S1_at--353--1611Chr02:23690834..23690858 (25 bp)
AGCTGAAGCTCCACACATCATTGAA
LOC_Os02g39220
OsAffx.24649.1.S1_at--969--2491Chr02:23690973..23690992 (20 bp)
AACATGGTTGACACAATCGGTGCAA
LOC_Os02g39220
OsAffx.24649.1.S1_at--969--491Chr02:23690983..23691007 (25 bp)
ATCGGTGCAAGGCTGAGACGTCCAC
LOC_Os02g39220
OsAffx.24649.1.S1_at--315--5191Chr02:23690989..23691013 (25 bp)
GCAAGGCTGAGACGTCCACATGGAA
LOC_Os02g39220
OsAffx.24649.1.S1_at--684--4371Chr02:23691004..23691364 (25 bp)
CCACATGGAAGGGTCATAGATGCAT
LOC_Os02g39220
OsAffx.24649.1.S1_at--25--5832Chr02:23691734..23692080 (25 bp)
GACCTCAATAATACACATTGGAATG
LOC_Os02g39220
Target Sequence
GATAAGGTCCATGATCCTATGGAAATTGTGCCTAAAGGAGCTCCAACAAAAAGACTACGAGGATTCATGGAGAAGCGTGT
TAGGCGTTGTGGGATAGCTGAAGCTCCACACATCATTGAAAGCGATGATGATAGTTTGTTTGAAAAAAACATGGTTGACA
CAATCGGTGCAAGGCTGAGACGTCCACATGGAAGGGTCATAGATGCATACATTATGTTGATTAAAGACATGCAAGTGAAA
GTCCAAGAGAGCATGATTTTCCTACCACTCAATAGAAACTCAACTCATTGGTACGTGGCTGTTCTCAATGGTGCTAAAGA
AAAAATTCAAATACTAGACTCGATGCGCATGGAAAAGAGCTACTACGACAAAGATAAAGACCTCAATAATACACATTGGA
ATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24649.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis