Browse Element(s) Details


OsAffx.25357.1.S1_at

Description tigr:9631.m03326
TID=OsAffx.25357.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3387011/11hypothetical protein
LOC_Os12g424601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g33819NANA3+19277959..19281750retrotransposon protein, putative, unclassified
LOC_Os03g33828NANA3+19284278..19286477retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g33837NANA3+19286699..19287274hypothetical protein
LOC_Os03g33850NANA3+19289005..19291161retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g33860NANA3+19295352..19296494retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g33864NANA3+19298955..19299505NA
LOC_Os03g33870OsAffx.25357.1.S1_at11/113+19302363..19304487hypothetical protein
LOC_Os03g33880NANA3+19304629..19305159retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g33890NANA3+19305331..19306291retrotransposon protein, putative, unclassified
LOC_Os03g33900NANA3+19307554..19310046hypothetical protein
LOC_Os03g33920NANA3+19317709..19318401hypothetical protein
LOC_Os03g33930NANA3+19320577..19321497hypothetical protein
LOC_Os03g33940NANA3+19323079..19326885retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g33950NANA3+19327918..19330480retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25357.1.S1_at--981--8131Chr03:19303508..19303532 (25 bp)
GGACATGGCACCTTTGAACTACCGG
LOC_Os03g33870
OsAffx.25357.1.S1_at--921--4971Chr03:19303515..19303539 (25 bp)
GCACCTTTGAACTACCGGGTGATTT
LOC_Os03g33870
OsAffx.25357.1.S1_at--178--3971Chr03:19303530..19303554 (25 bp)
CGGGTGATTTTTGTTTCGAGGAGAT
LOC_Os03g33870
OsAffx.25357.1.S1_at--930--5972Chr03:19303571..19303914 (25 bp)
GAGAAATCCAGAGAACTTCAATGTA
LOC_Os03g33870
OsAffx.25357.1.S1_at--1051--8511Chr03:19304069..19304093 (25 bp)
TGGAAATTCTATATGCTCTAGGACT
LOC_Os03g33870
OsAffx.25357.1.S1_at--929--5711Chr03:19304090..19304114 (25 bp)
GACTCCTGCCCAACAGTGGTGGTTT
LOC_Os03g33870
OsAffx.25357.1.S1_at--428--6851Chr03:19304111..19304135 (25 bp)
GTTTGGCTCCACCAGTCATTGGCTA
LOC_Os03g33870
OsAffx.25357.1.S1_at--206--1671Chr03:19304187..19304211 (25 bp)
AGCCCTTGATGCTGGTAGAAAGAAA
LOC_Os03g33870
OsAffx.25357.1.S1_at--139--2951Chr03:19304266..19304290 (25 bp)
AAGGCTACTGCCGATGTTCTGCCAG
LOC_Os03g33870
OsAffx.25357.1.S1_at--1010--2671Chr03:19304351..19304375 (25 bp)
AAGCGGCTGAACACGATAGTGACAC
LOC_Os03g33870
OsAffx.25357.1.S1_at--815--2471Chr03:19304360..19304384 (25 bp)
AACACGATAGTGACACCCGAGAACA
LOC_Os03g33870
Target Sequence 
GGACATGGCACCTTTGAACTACCGGGTGATTTTTGTTTCGAGGAGATTAATTCAGAAAAATATGAGAAATCCAGAGAACT
TCAATGTATATGACAGATCTATTCCTGAAGCTGTCCCTCAACCAACAGAATCTTGTCCTCCTCATCATAGCAACAGTGGT
GTGGAAATTCTATATGCTCTAGGACTCCTGCCCAACAGTGGTGGTTTGGCTCCACCAGTCATTGGCTACCATACCCCCAA
GACTTCAACATTGCTGCATGATCTGCCCCGTGTGCCGATAGCCCTTGATGCTGGTAGAAAGAAAAGAGCAAAGTCGGCTG
GTGCACCATCGGCTGCAAAGAAGAAGCCTAGGAAACAAAAGGCTACTGCCGATGTTCTGCCAGCCATAGATCTAGATGTA
GCAGAATTCCTGGAGGGTGAAGAATTGGCAGAAGATGTGGATGAAGCGGCTGAACACGATAGTGACACCCGAGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25357.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis