Browse Element(s) Details


OsAffx.26149.1.S1_at

Description tigr:9632.m02423
TID=OsAffx.26149.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2483010/11hypothetical protein
LOC_Os04g2583010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24810OsAffx.26219.1.S1_at7/114+14234445..14235074MADS-box family protein, putative
LOC_Os04g24810OsAffx.26219.1.S1_x_at6/114+14234445..14235074MADS-box family protein, putative
LOC_Os04g24820OsAffx.13963.1.S1_at11/114+14239849..14241465F-box domain containing protein
LOC_Os04g24830OsAffx.26149.1.S1_at10/114+14258728..14261051hypothetical protein
LOC_Os04g24840OsAffx.26136.1.S1_at11/114+14275728..14281927hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26149.1.S1_at--365--4532Chr04:14258789..14258813 (25 bp)
GCCGCGAACCGGAGGTTGAGTATTT
LOC_Os04g24830
OsAffx.26149.1.S1_at--856--6072Chr04:14258806..14258830 (25 bp)
GAGTATTTGTTGCTCACACGTGCAC
LOC_Os04g24830
OsAffx.26149.1.S1_at--156--2172Chr04:14258821..14258845 (25 bp)
ACACGTGCACAATGGGAGAATCTCT
LOC_Os04g24830
OsAffx.26149.1.S1_at--399--5372Chr04:14258866..14258890 (25 bp)
GAAGACGGCAGCGACTCCAACAGTA
LOC_Os04g24830
OsAffx.26149.1.S1_at--1069--5712Chr04:14258878..14258902 (25 bp)
GACTCCAACAGTAGCGAGCGCAAGG
LOC_Os04g24830
OsAffx.26149.1.S1_at--1094--9351NONE
TCTGTTTGTAGACTTAAGGCCGGTA
NONE
OsAffx.26149.1.S1_at--658--852Chr04:14260720..14260744 (25 bp)
ATGGCAACGGCCTTCTTCCATGCAA
LOC_Os04g24830
OsAffx.26149.1.S1_at--371--4412Chr04:14260811..14260835 (25 bp)
GCCACTGGCCTCTCTTGTAGATCTG
LOC_Os04g24830
OsAffx.26149.1.S1_at--925--4672Chr04:14260873..14260897 (25 bp)
GCGGATTCACATGCGTTAGCGTCAA
LOC_Os04g24830
OsAffx.26149.1.S1_at--132--8232Chr04:14260926..14260950 (25 bp)
GGCAAGCTTAGCAGTGGTGGATCTA
LOC_Os04g24830
OsAffx.26149.1.S1_at--305--6412Chr04:14260945..14260969 (25 bp)
GATCTAGTGGCCACAGCCCCGGGAA
LOC_Os04g24830
Target Sequence 
GCCGCGAACCGGAGGTTGAGTATTTGTTGCTCACACGTGCACAATGGGAGAATCTCTATATCAAGGAGAAGAAAGGAGAA
GACGGCAGCGACTCCAACAGTAGCGAGCGCAAGGTTGATAGGAAGAAGCTGCAGATTGCATGTCTGTTTGTAGACTTAAG
GCCGGTAGAGGTGCATGAGGAGGTTGGTGCACTGCGGCGACGGAGCTGCCAGCCACCTCGCAGATCCGGCGATGCTGGCC
TTCTCCCTCGCAGACCCGATGGCAACGGCCTTCTTCCATGCAAACCAGCACAGCCAGCCTTCTCCCTCGCAGATCTGGTG
GCGGCGGCCTCAGGAGCGGTGGATCCACCGCCACTGGCCTCTCTTGTAGATCTGGCTATGACAATGATGGGTGGCNCTGG
CCCTAGGAGGGGCGGATTCACATGCGTTAGCGTCAAGTGTGGCAGTGGCGTTGACGACGATGGCGGCAAGCTTAGCAGTG
GTGGATCTAGTGGCCACAGCCCCGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26149.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis