Browse Element(s) Details


OsAffx.26737.1.S1_at

Description tigr:9633.m00430
TID=OsAffx.26737.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to S-adenosylmethionine decarboxylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0499011/11S-adenosylmethionine decarboxylase proenzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04960Os.24612.1.A1_at10/115+2378666..2379980phosphoglycerate mutase family protein, expressed
LOC_Os05g04970OsAffx.21897.5.S1_x_at6/115+2384482..2387423retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04980NANA5+2387740..2393850retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04990OsAffx.26737.1.S1_at11/115+2395295..2396374S-adenosylmethionine decarboxylase proenzyme family protein, expressed
LOC_Os05g05000NANA5+2401920..2408018retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05010NANA5+2408335..2411273retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05020Os.49479.1.S1_at11/115+2414955..2415600expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006596biological_processpolyamine biosynthesis
GO:0004014molecular_functionadenosylmethionine decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26737.1.S1_at--659--9451Chr05:2395834..2395858 (25 bp)
TCGGCGTCGTCATCCGACGCGGATG
LOC_Os05g04990
OsAffx.26737.1.S1_at--240--8371Chr05:2395672..2395696 (25 bp)
GGCGTGGTGGACGAGAATGACCCGC
LOC_Os05g04990
OsAffx.26737.1.S1_at--198--3011Chr05:2395657..2395681 (25 bp)
AATGACCCGCGCTCCCTGGTGTGCG
LOC_Os05g04990
OsAffx.26737.1.S1_at--168--8631Chr05:2395641..2395665 (25 bp)
TGGTGTGCGCCTACGCGTTCGCGCC
LOC_Os05g04990
OsAffx.26737.1.S1_at--954--9671Chr05:2395563..2395587 (25 bp)
TCACGCCGGAGGACGGCCACTGCTA
LOC_Os05g04990
OsAffx.26737.1.S1_at--378--6191Chr05:2395555..2395579 (25 bp)
GAGGACGGCCACTGCTACGCCAGCT
LOC_Os05g04990
OsAffx.26737.1.S1_at--188--9091Chr05:2395543..2395567 (25 bp)
TGCTACGCCAGCTTCGAGTGCGCCA
LOC_Os05g04990
OsAffx.26737.1.S1_at--525--1651Chr05:2395383..2395407 (25 bp)
AGCCGCTTGGCCTGGCGTGCCATTG
LOC_Os05g04990
OsAffx.26737.1.S1_at--1161--3591Chr05:2395378..2395402 (25 bp)
CTTGGCCTGGCGTGCCATTGCCGCG
LOC_Os05g04990
OsAffx.26737.1.S1_at--322--8251Chr05:2395330..2395354 (25 bp)
GGCACCGTGACCTACCAGACGTTCA
LOC_Os05g04990
OsAffx.26737.1.S1_at--879--1771Chr05:2395327..2395351 (25 bp)
ACCGTGACCTACCAGACGTTCACGG
LOC_Os05g04990
Target Sequence 
TCGGCGTCGTCATCCGACGCGGATGGCGCGGCGCGGCTCACGGCGGAGGTGTGCATGACGGAGCTGGACCGCGGCATGGC
CGCGCGGTTCTACCAGCGCCCCGGCGACGGCCGGACCAGCCACGCCATCGGCGACGAGATGACGGCGGCGTCGGGGATCG
GCGGCGTGGTGGACGAGAATGACCCGCGCTCCCTGGTGTGCGCCTACGCGTTCGCGCCGTGCGGCTACTCCATGAACGCG
CTCGACGGCGCGCGCTACGCCACCGTGCACGTCACGCCGGAGGACGGCCACTGCTACGCCAGCTTCGAGTGCGCCACCGA
CGACGCCGCCGCCGCGCTCGCCGCCATCCGCCGCGCCGTCGCCGCGTTCCGCCCGGCCACCGTCTCGGTCTCCATCTCCC
ACACCTCCAGCGCCGCGTCGTCGCTCTGCACGCCGGTGGCCGAAGCCCTGGAGCCGCTTGGCCTGGCGTGCCATTGCCGC
GCCGCCGAGGTCTTCCCCGGCGCCGGCACCGTGACCTACCAGACGTTCACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26737.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis