Browse Element(s) Details


OsAffx.27921.1.S1_x_at

Description tigr:9634.m03182
TID=OsAffx.27921.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g338805/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33820NANA6+19677774..19680839transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33830NANA6+19683598..19684278transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33840NANA6+19685766..19687902transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33850NANA6+19689105..19689593retrotransposon protein, putative, unclassified
LOC_Os06g33860NANA6+19690814..19692211retrotransposon protein, putative, unclassified
LOC_Os06g33870NANA6+19692895..19694181transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33880OsAffx.27921.1.S1_x_at5/116+19700318..19700834expressed protein
LOC_Os06g33890NANA6+19711500..19717595retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g33900OsAffx.21897.5.S1_x_at7/116+19717912..19720854retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g33910NANA6+19723345..19723623hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27921.1.S1_x_at--297--8611Chr06:19700460..19700484 (25 bp)
TGGTGCTACGCGACGCCCGAGCCGG
LOC_Os06g33880
OsAffx.27921.1.S1_x_at--233--5791Chr06:19700507..19700531 (25 bp)
GACGACGATCGGACACCTGCTGAGG
LOC_Os06g33880
OsAffx.27921.1.S1_x_at--715--4091Chr06:19700509..19700533 (25 bp)
CGACGATCGGACACCTGCTGAGGGA
LOC_Os06g33880
OsAffx.27921.1.S1_x_at--179--1751Chr06:19700521..19700545 (25 bp)
ACCTGCTGAGGGAAGAAGAACCGGC
LOC_Os06g33880
OsAffx.27921.1.S1_x_at--400--671Chr06:19700557..19700581 (25 bp)
ATGAAGAGGAGACGGCTGCATCGGC
LOC_Os06g33880
OsAffx.27921.1.S1_x_at--690--5292Chr06:19701727..19701749 (23 bp)
GAAGGAACTCCTTATCCTCCTCGTT
NONE
OsAffx.27921.1.S1_x_at--418--952Chr06:19701727..19701751 (25 bp)
AGGAACTCCTTATCCTCCTCGTTCA
NONE
OsAffx.27921.1.S1_x_at--488--8171Chr06:19701728..19701752 (25 bp)
GGAACTCCTTATCCTCCTCGTTCAA
NONE
OsAffx.27921.1.S1_x_at--310--5451Chr06:19701729..19701753 (25 bp)
GAACTCCTTATCCTCCTCGTTCAAG
NONE
OsAffx.27921.1.S1_x_at--882--2471Chr06:19701730..19701754 (25 bp)
AACTCCTTATCCTCCTCGTTCAAGG
NONE
OsAffx.27921.1.S1_x_at--235--1831Chr06:19701731..19701755 (25 bp)
ACTCCTTATCCTCCTCGTTCAAGGT
NONE
Target Sequence 
TGGTGCTACGCGACGCCCGAGCCGGCCTCCGCCACTGCCACCGCCACGACGACGATCGGACACCTGCTGAGGGAAGAAGA
ACCGGCAGAGGAGGAGGATGAAGAGGAGACGGCTGCATCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGGGTGAAGGAAC
TCCTTATCCTCCTCGTTCAAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27921.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis