Browse Element(s) Details


OsAffx.28148.1.S1_x_at

Description tigr:9634.m04622
TID=OsAffx.28148.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4743011/11hypothetical protein
LOC_Os10g2970011/11hypothetical protein
LOC_Os02g5047010/11expressed protein
LOC_Os01g630502/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47360OsAffx.15971.1.S1_x_at9/116+28706293..28707351Expansin-related protein 2 precursor, putative, expressed
LOC_Os06g47360OsAffx.15971.1.S1_at9/116+28706293..28707351Expansin-related protein 2 precursor, putative, expressed
LOC_Os06g47370NANA6+28709015..28711976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g47380Os.10703.2.S1_x_at1/116+28712293..28718382retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g47390OsAffx.5135.1.S1_at11/116+28719941..28720587hypothetical protein
LOC_Os06g47390OsAffx.15971.1.S1_at1/116+28719941..28720587hypothetical protein
LOC_Os06g47390OsAffx.15971.1.S1_x_at1/116+28719941..28720587hypothetical protein
LOC_Os06g47400OsAffx.15972.1.S1_at11/116+28722597..28723358F-box domain containing protein
LOC_Os06g47410OsAffx.5136.1.S1_at11/116+28724243..28725531hypothetical protein
LOC_Os06g47410OsAffx.5118.1.S1_x_at3/116+28724243..28725531hypothetical protein
LOC_Os06g47420OsAffx.5118.1.S1_x_at1/116+28725889..28727266transposon protein, putative, unclassified
LOC_Os06g47430OsAffx.28148.1.S1_x_at11/116+28731634..28733317hypothetical protein
LOC_Os06g47440OsAffx.28149.1.S1_at11/116+28735302..28737622hypothetical protein
LOC_Os06g47450OsAffx.15973.1.S1_at8/116+28741346..28741710hypothetical protein
LOC_Os06g47460NANA6+28741941..28746114hypothetical protein
LOC_Os06g47470OsAffx.28152.2.S1_at11/116+28749201..28756372Protein kinase domain containing protein, expressed
LOC_Os06g47480OsAffx.28151.1.S1_at11/116+28757923..28758357hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28148.1.S1_x_at--507--8093Chr10:15115178..15115202 (25 bp)
GGAGCGCGGCCCATTCGAGCACGAA
LOC_Os10g29700
OsAffx.28148.1.S1_x_at--258--4713Chr10:15115183..15115207 (25 bp)
GCGGCCCATTCGAGCACGAAGATGG
LOC_Os10g29700
OsAffx.28148.1.S1_x_at--783--4213Chr10:15115219..15115243 (25 bp)
CCGCCGACGAGCTTGAGGATGACCT
LOC_Os10g29700
OsAffx.28148.1.S1_x_at--316--6233Chr10:15115332..15115356 (25 bp)
GATGGCGGTGACTACGGCGGGAGCG
LOC_Os10g29700
OsAffx.28148.1.S1_x_at--363--94Chr10:15115500..15115523 (24 bp)
ATTCCACCTCCTGAAGCAGAGGCAG
LOC_Os10g29700
OsAffx.28148.1.S1_x_at--730--5394Chr10:15115511..15115535 (25 bp)
GAAGCAGAGGCAGCTGTTGAAGCAA
LOC_Os10g29700
OsAffx.28148.1.S1_x_at--413--7193Chr10:15115596..15115620 (25 bp)
GTCGGCCCGCCGCTTGGTCTGAACT
LOC_Os10g29700
OsAffx.28148.1.S1_x_at--984--10833Chr10:15115609..15115633 (25 bp)
TTGGTCTGAACTCGTCCGGCTGGCC
LOC_Os10g29700
OsAffx.28148.1.S1_x_at--381--9033Chr10:15115639..15115663 (25 bp)
TGCAGAAGTCCCACCAGCAGGCGTC
LOC_Os10g29700
OsAffx.28148.1.S1_x_at--20--3393Chr10:15115694..15115718 (25 bp)
CAGCCCTCCAGGAGGCAAACCGGAA
LOC_Os10g29700
OsAffx.28148.1.S1_x_at--331--6193Chr10:15115705..15115729 (25 bp)
GAGGCAAACCGGAACGCACGGGCAC
LOC_Os10g29700
Target Sequence 
GGAGCGCGGCCCATTCGAGCACGAAGATGGCGGCGCCGAGGCCGCCGACGAGCTTGAGGATGACCTCGCCGTCNTCCTNC
CNGACGTAGGACCGCAGCTCGGCGAGGAAGTCGCCGNCCTGCGTGAAGGNGAGCAGCGCGGCGGCGCCNTGGAAGATGGC
GGTGACTACGGCGGGAGCGGGAGCAGCGNATTCCACCTCCTGAAGCAGAGGCAGCTGTTGAAGCAANAACGGGAGCAGCA
GCTCGCCGCGGCAACAGCGGCGACGTGGGGCACGCACCGCGCCGGCGTCGGCCCGCCGCTTGGTCTGAACTCGTCCGGCT
GGCCNCCGCTGCAGAAGTCCCACCAGCAGGCGTCGTCCGCGGCCGGCATGCGCGCCGTGTTCCTCAGCCCTCCAGGAGGC
AAACCGGAACGCACGGGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28148.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis