Browse Element(s) Details


OsAffx.28149.1.S1_at

Description tigr:9634.m04623
TID=OsAffx.28149.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4744011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47370NANA6+28709015..28711976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g47380Os.10703.2.S1_x_at1/116+28712293..28718382retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g47390OsAffx.5135.1.S1_at11/116+28719941..28720587hypothetical protein
LOC_Os06g47390OsAffx.15971.1.S1_at1/116+28719941..28720587hypothetical protein
LOC_Os06g47390OsAffx.15971.1.S1_x_at1/116+28719941..28720587hypothetical protein
LOC_Os06g47400OsAffx.15972.1.S1_at11/116+28722597..28723358F-box domain containing protein
LOC_Os06g47410OsAffx.5136.1.S1_at11/116+28724243..28725531hypothetical protein
LOC_Os06g47410OsAffx.5118.1.S1_x_at3/116+28724243..28725531hypothetical protein
LOC_Os06g47420OsAffx.5118.1.S1_x_at1/116+28725889..28727266transposon protein, putative, unclassified
LOC_Os06g47430OsAffx.28148.1.S1_x_at11/116+28731634..28733317hypothetical protein
LOC_Os06g47440OsAffx.28149.1.S1_at11/116+28735302..28737622hypothetical protein
LOC_Os06g47450OsAffx.15973.1.S1_at8/116+28741346..28741710hypothetical protein
LOC_Os06g47460NANA6+28741941..28746114hypothetical protein
LOC_Os06g47470OsAffx.28152.2.S1_at11/116+28749201..28756372Protein kinase domain containing protein, expressed
LOC_Os06g47480OsAffx.28151.1.S1_at11/116+28757923..28758357hypothetical protein
LOC_Os06g47490NANA6+28758951..28760043hypothetical protein
LOC_Os06g47500OsAffx.22699.1.S1_x_at2/116+28761362..28761872retrotransposon protein, putative, unclassified
LOC_Os06g47510NANA6+28762056..28765012retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28149.1.S1_at--18--7511Chr06:28737561..28737585 (25 bp)
GTGGAGGTTTCAACGGTCCTGCTGC
LOC_Os06g47440
OsAffx.28149.1.S1_at--295--4651Chr06:28737450..28737559 (25 bp)
GCGTACTACCTGAAGCTTTCTTGTG
LOC_Os06g47440
OsAffx.28149.1.S1_at--794--10811Chr06:28737430..28737454 (25 bp)
TTGTGACACCTGTGGAGAGCCTACC
LOC_Os06g47440
OsAffx.28149.1.S1_at--165--9991Chr06:28737409..28737433 (25 bp)
TACCACCAGAGACGTGTGCCTTGTG
LOC_Os06g47440
OsAffx.28149.1.S1_at--350--7511Chr06:28737340..28737364 (25 bp)
GTGGAGGTATACTTGCTACCCCACC
LOC_Os06g47440
OsAffx.28149.1.S1_at--438--3831Chr06:28737316..28737340 (25 bp)
CTGCCCGGATTCAGGACACGTAGTA
LOC_Os06g47440
OsAffx.28149.1.S1_at--681--7831Chr06:28736017..28736041 (25 bp)
GGTAATGATGCTCCAGTCCAAGGGA
LOC_Os06g47440
OsAffx.28149.1.S1_at--37--8611Chr06:28735862..28735983 (25 bp)
TGGGTTGCCACCAAGGTTACTGGGT
LOC_Os06g47440
OsAffx.28149.1.S1_at--1113--6971Chr06:28735839..28735863 (25 bp)
GTACCGTTGTGAGCTGGAGTTGACC
LOC_Os06g47440
OsAffx.28149.1.S1_at--1035--8011Chr06:28735824..28735848 (25 bp)
GGAGTTGACCGCAGACCACTTCAAG
LOC_Os06g47440
OsAffx.28149.1.S1_at--945--2831Chr06:28735773..28735797 (25 bp)
AAGTACTTCTACCAAATTCTCTGTG
LOC_Os06g47440
Target Sequence 
GTGGAGGTTTCAACGGTCCTGCTGCCGCGTACTACCTGAAGCTTTCTTGTGACACCTGTGGAGAGCCTACCACCAGAGAC
GTGTGCCTTGTGCCTGGGCCAGATTCGTGCACCAACCTGCCCGGAATCAAGAACCAGTGGAGGTATACTTGCTACCCCAC
CTGCCCGGATTCAGGACACGTAGTAGTCCGTAAGTGCAAGGTGTGCTCTGCCTTGGGCTCGGTGGCTCTGCTGCCAGGAC
ACGGGAAGGCATTGACTACAAGTTCTAGAACCATGGTAATGATGCTCCAGTCCAAGGGATACACTCCCACCAATTTCGCC
CCAGGAAGTAGGTGGGTTGCCACCAAGGTTACTGGGTACCGTTGTGAGCTGGAGTTGACCGCAGACCACTTCAAGGGGTA
CGATGGTACCATCACCATCCCAAGTACTTCTACCAAATTCTCTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28149.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis