Browse Element(s) Details


OsAffx.2815.1.S1_at

Description tigr:9630.m02968
TID=OsAffx.2815.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3094010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30910Os.16044.1.S1_at11/112+18448539..18451267nodulin MtN3 family protein, putative, expressed
LOC_Os02g30920NANA2+18463256..18464808hypothetical protein
LOC_Os02g30930OsAffx.12300.1.S1_at11/112+18468625..18470220hypothetical protein
LOC_Os02g30940OsAffx.2815.1.S1_at10/112+18473317..18475479hypothetical protein
LOC_Os02g30950OsAffx.24517.1.S1_at11/112+18484715..18485941hypothetical protein
LOC_Os02g30950OsAffx.18711.1.S1_at1/112+18484715..18485941hypothetical protein
LOC_Os02g30960OsAffx.24518.2.S1_x_at11/112+18489698..18492227hAT family dimerisation domain containing protein
LOC_Os02g30960OsAffx.19258.2.S1_x_at3/112+18489698..18492227hAT family dimerisation domain containing protein
LOC_Os02g30974Os.8606.1.S1_at11/112+18495365..18503763expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2815.1.S1_at--970--9311Chr02:18474592..18474616 (25 bp)
TCGCGAGGACCCCAAGAGGCACGTA
LOC_Os02g30940
OsAffx.2815.1.S1_at--333--991Chr02:18474461..18474485 (25 bp)
AGGATGGATGCGTGCTCCACGTGAC
LOC_Os02g30940
OsAffx.2815.1.S1_at--290--1911Chr02:18474443..18474467 (25 bp)
ACGTGACCGTGTTTGGGCTCAGCTA
LOC_Os02g30940
OsAffx.2815.1.S1_at--173--6991NONE
GTACCTGGTGTCTAGGCCGCATAAA
NONE
OsAffx.2815.1.S1_at--103--1411Chr02:18473772..18473796 (25 bp)
AGACTATACCAAATTGCTCCCAGCG
LOC_Os02g30940
OsAffx.2815.1.S1_at--298--71Chr02:18473760..18473784 (25 bp)
ATTGCTCCCAGCGATCAGTACAAAA
LOC_Os02g30940
OsAffx.2815.1.S1_at--1078--1031Chr02:18473719..18473743 (25 bp)
AGGTGCTCAAGGGTTTCTCTTTCTC
LOC_Os02g30940
OsAffx.2815.1.S1_at--797--8911Chr02:18473480..18473714 (25 bp)
TGAGCATAGAACACAGGACCATTTA
LOC_Os02g30940
OsAffx.2815.1.S1_at--21--6491Chr02:18473454..18473478 (25 bp)
GATACTCATCAGAGAGCCGATCCAA
LOC_Os02g30940
OsAffx.2815.1.S1_at--405--1671Chr02:18473440..18473464 (25 bp)
AGCCGATCCAAAGGGTCTGCCATTT
LOC_Os02g30940
OsAffx.2815.1.S1_at--68--6491Chr02:18473406..18473430 (25 bp)
GATACTCCTGATAGGCCAGATCTGA
LOC_Os02g30940
Target Sequence 
TCGCGAGGACCCCAAGAGGCACGTAGGGCATCCCTCGGGCGCCACGCTCGCGTACATGGGCGACGGCGTGTTCTGCCTCG
TCGAGTGCGCGCTTCGCCGTGGCCTCGACATGGCGGACGCCCTGTGCGCGGAGGATGGATGCGTGCTCCACGTGACCGTG
TTTGGGCTCAGCTACGACAAGGCGGGGGAGCTGCGGATTTCACCTCGCCGCCGTGGTCGCACGTACCTGGTGTCTAGGCC
GCATAAAGAACCTTTTCCAGGAAGTGCGAAGATTGATAGGAGTTCTTGGCATGTGTTAGCATATTCTCAAAAGAGTAGGA
GAGATTTCAGACTATACCAAATTGCTCCCAGCGATCAGTACAAAAGGGACAGGAGAAGAAAAGGTGCTCAAGGGTTTCTC
TTTCTCCAAATGAGCATAGAACACAGGACCATTTATGATACTCATCAGAGAGCCGATCCAAAGGGTCTGCCATTTGAATT
TGAAGATACTCCTGATAGGCCAGATCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2815.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis