Browse Element(s) Details


OsAffx.28486.1.S1_at

Description tigr:9635.m01726
TID=OsAffx.28486.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1717010/11hypothetical protein
LOC_Os07g171601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17140Os.47463.1.S1_x_at6/117+10068211..10073079transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17140Os.14491.2.S1_x_at5/117+10068211..10073079transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17150NANA7+10074553..10078366transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17160OsAffx.16305.1.S1_at10/117+10088952..10091708hypothetical protein
LOC_Os07g17160OsAffx.28486.1.S1_at1/117+10088952..10091708hypothetical protein
LOC_Os07g17170OsAffx.28486.1.S1_at10/117+10096061..10098251hypothetical protein
LOC_Os07g17180OsAffx.16306.1.S1_at11/117+10107914..10109731No apical meristem protein
LOC_Os07g17189NANA7+10118574..10119009NA

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Gene Ontology Classification
GO idTypeName
GO:0009723biological_processresponse to ethylene stimulus
GO:0009873biological_processethylene mediated signaling pathway
GO:0010182biological_processsugar mediated signaling
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28486.1.S1_at--671--5531NONE
GAAACAGGCGTTGAAGCTCCTAATT
NONE
OsAffx.28486.1.S1_at--340--5411Chr07:10097359..10097383 (25 bp)
GAAGCTCCTAATTCTGTATCACTTT
LOC_Os07g17170
OsAffx.28486.1.S1_at--452--3871Chr07:10097346..10097370 (25 bp)
CTGTATCACTTTTGATCGTTCTAAT
LOC_Os07g17170
OsAffx.28486.1.S1_at--919--6712Chr07:10089994..10090019 (25 bp)
GTTCTAATAATCCTCTTTGCACCAG
LOC_Os07g17160
OsAffx.28486.1.S1_at--312--10271Chr07:10097314..10097338 (25 bp)
TTTGCACCAGAAAACCCAACAATCT
LOC_Os07g17170
OsAffx.28486.1.S1_at--1094--2111Chr07:10097073..10097301 (25 bp)
ACAGGAAAGAAAGTACACGTCAGCT
LOC_Os07g17170
OsAffx.28486.1.S1_at--876--9851Chr07:10097060..10097288 (25 bp)
TACACGTCAGCTTGAGTTGCTGCGA
LOC_Os07g17170
OsAffx.28486.1.S1_at--508--4931Chr07:10097051..10097075 (25 bp)
GCTTGAGTTGCTGCGAGTTGGCATA
LOC_Os07g17170
OsAffx.28486.1.S1_at--1162--911Chr07:10096723..10096747 (25 bp)
AGGCTAAGGCTATGGTTAGAGCTAT
LOC_Os07g17170
OsAffx.28486.1.S1_at--744--10031Chr07:10096707..10096731 (25 bp)
TAGAGCTATGCTTCGAACAAACAAA
LOC_Os07g17170
OsAffx.28486.1.S1_at--147--8311Chr07:10096091..10096115 (25 bp)
GGCTATGGCTATGGCTAAGGCTATA
LOC_Os07g17170
Target Sequence 
GAAACAGGCGTTGAAGCTCCTAATTCTGTATCACTTTTGATCGTTCTAATAATCCTCTTTGCACCAGAAAACCCAACAAT
CTGGAAGGAGTTCAACAGGAAAGAAAGTACACGTCAGCTTGAGTTGCTGCGAGTTGGCATAAAGAATGGTGGGATGGTGA
TATCCGATAGGGTGGATGGAGGAGCCAGTGGTAGCAGCCCCAGGCAGGGAGGAGCCAGTGGTGTTAAAACTGAATGTGAG
AGTGAAGCTGAAAGTGATAATGAAGATGAAAAGGCTAAGGCTATGGTTAGAGCTATGCTTCGAACAAACAAAGGTGTCAA
AACTGAAGATGACAGTGAAACTGAAAGTGACAATGATGATGAAAAGCCTAAGGCTATGGCTATGGCTAAGGCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28486.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis