Browse Element(s) Details


OsAffx.28739.2.S1_at

Description tigr:9635.m03372
TID=OsAffx.28739.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3417011/112-Hydroxyisoflavanone dehydratase, putative
LOC_Os07g343701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34150Os.47463.1.S1_x_at6/117+20425948..20430811transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g34150Os.14491.2.S1_x_at5/117+20425948..20430811transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g34160NANA7+20432409..20435740transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g34170OsAffx.28739.2.S1_at11/117+20447307..204486502-Hydroxyisoflavanone dehydratase, putative
LOC_Os07g34180NANA7+20451204..20451521hypothetical protein
LOC_Os07g34190NANA7+20453818..20455154Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os07g34200Os.47463.1.S1_x_at6/117+20456381..20460078transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g34200Os.14491.2.S1_x_at5/117+20456381..20460078transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g34210NANA7+20463263..20466595transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28739.2.S1_at--598--1932Chr07:20448175..20448199 (25 bp)
ACGGACGCAACGTGACGCTTGTGGA
LOC_Os07g34170
OsAffx.28739.2.S1_at--545--5171Chr07:20448388..20448412 (25 bp)
GCAAGATGTCGAAGGCCCAGCCACT
LOC_Os07g34170
OsAffx.28739.2.S1_at--587--1691Chr07:20448406..20448430 (25 bp)
AGCCACTCTTGAGCGTGCCTTCGAG
LOC_Os07g34170
OsAffx.28739.2.S1_at--555--10591Chr07:20448425..20448449 (25 bp)
TTCGAGGCCGTACCAGGGAGTATTT
LOC_Os07g34170
OsAffx.28739.2.S1_at--362--8031Chr07:20448441..20448465 (25 bp)
GGAGTATTTCTCAATGGGCCGGATT
LOC_Os07g34170
OsAffx.28739.2.S1_at--1158--2971Chr07:20448453..20448477 (25 bp)
AATGGGCCGGATTTGCAAGCTCCGC
LOC_Os07g34170
OsAffx.28739.2.S1_at--380--8411Chr07:20448480..20448504 (25 bp)
GGCCCAAGTGCCATGAAGATCAATA
LOC_Os07g34170
OsAffx.28739.2.S1_at--318--3091Chr07:20448501..20448525 (25 bp)
AATAATGCATTGACAGTTGGGCTGG
LOC_Os07g34170
OsAffx.28739.2.S1_at--229--1331Chr07:20448540..20448564 (25 bp)
AGAGGGTTCGGTTCATTTGCGACCT
LOC_Os07g34170
OsAffx.28739.2.S1_at--743--3891Chr07:20448563..20448587 (25 bp)
CTGGGCCAACCCTAATAATCGCAGG
LOC_Os07g34170
OsAffx.28739.2.S1_at--743--2671Chr07:20448594..20448618 (25 bp)
AAGCGCCCTCTGTCAGCATCAGTTT
LOC_Os07g34170
Target Sequence 
ACGGACGCAACGTGACGCTTGTGGAGTCGGAGGGCGAGGACCACGGGTTCCACCTCTACAGCCCTCTCCGCGCGACCAGC
AGGAGGCTCATGGAGAGCGTCGTGAGGTTCATCAACGAGAGGAGCGCGGCGGCGGCGGTGGCGGCGACCTCGCCGTGGCC
GGCCGGTGTCCTGCCGGAGTTGCACGAGTGCTCGCCGTCGCGCGCACGCAAGGGCAAGATGTCGAAGGCCCAGCCACTCT
TGAGCGTGCCTTCGAGGCCGTACCAGGGAGTATTTCTCAATGGGCCGGATTTGCAAGCTCCGCGTGGCCCAAGTGCCATG
AAGATCAATAATGCATTGACAGTTGGGCTGGATAAAGCATCGAAGAGAGGGTTCGGTTCATTTGCGACCTGGGCCAACCC
TAATAATCGCAGGGCAATCAAGCGCCCTCTGTCAGCATCAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28739.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis