Browse Element(s) Details


OsAffx.28968.1.S1_at

Description tigr:9636.m00003
TID=OsAffx.28968.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0103011/11ZIP Zinc transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01010OsAffx.30850.1.S1_at1/118+261..2244NA
LOC_Os08g01020OsAffx.5673.1.S1_at11/118+3839..7735hypothetical protein
LOC_Os08g01030OsAffx.28968.1.S1_at11/118+12574..17853ZIP Zinc transporter family protein, expressed
LOC_Os08g01030OsAffx.28968.1.S1_s_at10/118+12574..17853ZIP Zinc transporter family protein, expressed
LOC_Os08g01040Os.50424.1.S2_at11/118+19941..27167Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g01040Os.50424.1.S1_at10/118+19941..27167Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g01054Os.17519.1.S1_at11/118+29798..39772transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g01054Os.17519.2.S1_at10/118+29798..39772transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030001biological_processmetal ion transport
GO:0016020cellular_componentmembrane
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28968.1.S1_at--779--8971Chr08:12772..12796 (25 bp)
TGAACAAGGAACCTCATCAATGTTC
LOC_Os08g01030
OsAffx.28968.1.S1_at--735--5491Chr08:12771..12795 (25 bp)
GAACAAGGAACCTCATCAATGTTCT
LOC_Os08g01030
OsAffx.28968.1.S1_at--1083--2451Chr08:12770..12794 (25 bp)
AACAAGGAACCTCATCAATGTTCTC
LOC_Os08g01030
OsAffx.28968.1.S1_at--373--2231Chr08:12769..12793 (25 bp)
ACAAGGAACCTCATCAATGTTCTCC
LOC_Os08g01030
OsAffx.28968.1.S1_at--1089--3191Chr08:12768..12792 (25 bp)
CAAGGAACCTCATCAATGTTCTCCC
LOC_Os08g01030
OsAffx.28968.1.S1_at--403--2931Chr08:12767..12791 (25 bp)
AAGGAACCTCATCAATGTTCTCCCC
LOC_Os08g01030
OsAffx.28968.1.S1_at--274--951Chr08:12766..12790 (25 bp)
AGGAACCTCATCAATGTTCTCCCCA
LOC_Os08g01030
OsAffx.28968.1.S1_at--511--8171Chr08:12765..12789 (25 bp)
GGAACCTCATCAATGTTCTCCCCAG
LOC_Os08g01030
OsAffx.28968.1.S1_at--832--5431Chr08:12764..12788 (25 bp)
GAACCTCATCAATGTTCTCCCCAGG
LOC_Os08g01030
OsAffx.28968.1.S1_at--534--2631Chr08:12763..12787 (25 bp)
AACCTCATCAATGTTCTCCCCAGGT
LOC_Os08g01030
OsAffx.28968.1.S1_at--209--1751Chr08:12762..12786 (25 bp)
ACCTCATCAATGTTCTCCCCAGGTG
LOC_Os08g01030
Target Sequence 
TGAACAAGGAACCTCATCAATGTTCTCCCCAGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28968.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis