Browse Element(s) Details


OsAffx.28968.1.S1_s_at

Description tigr:9636.m00003
TID=OsAffx.28968.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0103010/11ZIP Zinc transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01010OsAffx.30850.1.S1_at1/118+261..2244NA
LOC_Os08g01020OsAffx.5673.1.S1_at11/118+3839..7735hypothetical protein
LOC_Os08g01030OsAffx.28968.1.S1_at11/118+12574..17853ZIP Zinc transporter family protein, expressed
LOC_Os08g01030OsAffx.28968.1.S1_s_at10/118+12574..17853ZIP Zinc transporter family protein, expressed
LOC_Os08g01040Os.50424.1.S2_at11/118+19941..27167Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g01040Os.50424.1.S1_at10/118+19941..27167Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g01054Os.17519.1.S1_at11/118+29798..39772transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g01054Os.17519.2.S1_at10/118+29798..39772transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030001biological_processmetal ion transport
GO:0016020cellular_componentmembrane
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28968.1.S1_s_at--105--10231Chr08:14671..14694 (24 bp)
TATTGGAAGGCCTACTTGGATTAGT
LOC_Os08g01030
OsAffx.28968.1.S1_s_at--237--7691Chr08:14560..14584 (25 bp)
GGGTCATGGCGTTTCTAACGTTATA
LOC_Os08g01030
OsAffx.28968.1.S1_s_at--990--9791Chr08:14545..14569 (25 bp)
TAACGTTATATGAAATGCTACCAAT
LOC_Os08g01030
OsAffx.28968.1.S1_s_at--592--4111Chr08:14501..14525 (25 bp)
CGCAAGGATGCTGTGAAGGCTGTAT
LOC_Os08g01030
OsAffx.28968.1.S1_s_at--592--5291Chr08:14487..14511 (25 bp)
GAAGGCTGTATTTGTTGGCATGGCT
LOC_Os08g01030
OsAffx.28968.1.S1_s_at--56--871Chr08:14473..14492 (20 bp)
ATGGCTTTTATGTCCATGAGCTTGC
LOC_Os08g01030
OsAffx.28968.1.S1_s_at--774--6251Chr08:13217..13241 (25 bp)
GATGGGTGCATAACATTTGAGTTGA
LOC_Os08g01030
OsAffx.28968.1.S1_s_at--158--10291NONE
TTTGCGCTAAGAATTGCCAAGCCAA
NONE
OsAffx.28968.1.S1_s_at--807--10671Chr08:12880..12904 (25 bp)
TTGCCAAGCCAACATAACCAAACTG
LOC_Os08g01030
OsAffx.28968.1.S1_s_at--467--2651Chr08:12865..12889 (25 bp)
AACCAAACTGGAGCATCGCATTTAA
LOC_Os08g01030
OsAffx.28968.1.S1_s_at--1021--6571Chr08:12832..12856 (25 bp)
GTTGGAAAGACATACCTACTGAAGG
LOC_Os08g01030
Target Sequence 
TATTGGAAGGCCTACTTGGATTAGTGGGAGGGGTCATGGCGTTTCTAACGTTATATGAAATGCTACCAATAGCATTTGAA
TACGCAGGACGCAAGGATGCTGTGAAGGCTGTATTTGTTGGCATGGCTTTTATGTCCATGAGCTTGCACTTCCTAGATAT
TAGTCTTCCAAAGGAGATGGGTGCATAACATTTGAGTTGAATTCTGATGTGGACAAGAGTATTTCATCATGGACTTTGCG
CTAAGAATTGCCAAGCCAACATAACCAAACTGGAGCATCGCATTTAATGATGTTGGTTGGAAAGACATACCTACTGAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28968.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis