Browse Element(s) Details


OsAffx.28986.1.S1_at

Description tigr:9636.m00129
TID=OsAffx.28986.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0229011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02270OsAffx.5681.1.S1_at11/118+813377..814284hypothetical protein
LOC_Os08g02280OsAffx.5682.1.S1_at11/118+815510..816064hypothetical protein
LOC_Os08g02290OsAffx.28986.1.S1_at11/118+818944..820387hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28986.1.S1_at--412--7791Chr08:819717..819738 (22 bp)
GGTGCCCAAATAATGAATGCTTATC
LOC_Os08g02290
OsAffx.28986.1.S1_at--649--5271Chr08:819703..819727 (25 bp)
GAATGCTTATCTTGGCAATTTCATT
LOC_Os08g02290
OsAffx.28986.1.S1_at--674--4891Chr08:819699..819723 (25 bp)
GCTTATCTTGGCAATTTCATTAGTA
LOC_Os08g02290
OsAffx.28986.1.S1_at--254--3131Chr08:819687..819711 (25 bp)
AATTTCATTAGTAGTTTGGCCAGAC
LOC_Os08g02290
OsAffx.28986.1.S1_at--479--3591Chr08:819682..819706 (25 bp)
CATTAGTAGTTTGGCCAGACAGGTT
LOC_Os08g02290
OsAffx.28986.1.S1_at--528--6831Chr08:819674..819698 (25 bp)
GTTTGGCCAGACAGGTTGGGCTTAA
LOC_Os08g02290
OsAffx.28986.1.S1_at--690--5651Chr08:819665..819689 (25 bp)
GACAGGTTGGGCTTAAGTTTCAGAA
LOC_Os08g02290
OsAffx.28986.1.S1_at--232--6631Chr08:819660..819684 (25 bp)
GTTGGGCTTAAGTTTCAGAAAACAG
LOC_Os08g02290
OsAffx.28986.1.S1_at--335--2411Chr08:819641..819665 (25 bp)
AAACAGAAAGCTGCTTGGGCTTGCA
LOC_Os08g02290
OsAffx.28986.1.S1_at--730--3611Chr08:819628..819652 (25 bp)
CTTGGGCTTGCAGCATCTGGGAATT
LOC_Os08g02290
OsAffx.28986.1.S1_at--359--5411Chr08:819016..819040 (25 bp)
GAAGCTCCGCCAGATTAGTGCGGAG
LOC_Os08g02290
Target Sequence 
GGTGCCCAAATAATGAATGCTTATCTTGGCAATTTCATTAGTAGTTTGGCCAGACAGGTTGGGCTTAAGTTTCAGAAAAC
AGAAAGCTGCTTGGGCTTGCAGCATCTGGGAATTTTTTTAGTGCAGATAAAGGAAAAGGCCGAGCGGATGCGCGCGGGGC
TGGAGGAAGCGCAGCGACGGCACGTCCGGGCGTTGGTGGCGGCTGTGGCGTGCGCCACGATGGGGAGGGTGCGTGCGGCG
GAGGCCAAGCTGGATCGCGCACGCTGCCACAACTCGGAGCTGGAGGAGAAGCTCCGCCAGATTAGTGCGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28986.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis