Browse Element(s) Details


OsAffx.29780.1.S1_at

Description tigr:9637.m00716
TID=OsAffx.29780.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g096009/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09540Os.53786.1.S1_at10/119+5149258..5153230expressed protein
LOC_Os09g09550OsAffx.6218.1.S1_at11/119+5155336..5157006hypothetical protein
LOC_Os09g09560OsAffx.29779.1.S1_at11/119+5158460..5160957hypothetical protein
LOC_Os09g09570OsAffx.17617.1.S1_at11/119+5162478..5163879expressed protein
LOC_Os09g09580NANA9+5166148..5168064retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09590NANA9+5172915..5173313hypothetical protein
LOC_Os09g09600OsAffx.29780.1.S1_at9/119+5175165..5178300hypothetical protein
LOC_Os09g09610OsAffx.29781.1.S1_at11/119+5181571..5182636hypothetical protein
LOC_Os09g09619OsAffx.9066.1.S1_x_at1/119+5185168..5186329NA
LOC_Os09g09630OsAffx.17620.1.S1_at11/119+5186993..5189200WRKY DNA binding domain containing protein
LOC_Os09g09640NANA9+5190398..5190983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g09650Os.36393.1.S1_at11/119+5196975..5200335expressed protein
LOC_Os09g09650Os.46050.1.A1_x_at2/119+5196975..5200335expressed protein
LOC_Os09g09660NANA9+5201340..5204432retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29780.1.S1_at--426--7751Chr09:5175332..5175356 (25 bp)
GGTGTACAACGGACGATGGCCTCAT
LOC_Os09g09600
OsAffx.29780.1.S1_at--53--1631Chr09:5175389..5175413 (25 bp)
AGCGGCGAGGTCATTTCCTCTAGAC
LOC_Os09g09600
OsAffx.29780.1.S1_at--102--1991NONE
ACTCCTAGCTATAACTGCAGTCTGC
NONE
OsAffx.29780.1.S1_at--854--511Chr09:5177092..5177116 (25 bp)
ATCGATGATCATCCCCAACTTTTGG
LOC_Os09g09600
OsAffx.29780.1.S1_at--301--931Chr09:5177145..5177169 (25 bp)
AGGCATCACAACTAAGGGCGCGGGA
LOC_Os09g09600
OsAffx.29780.1.S1_at--1090--8391Chr09:5177161..5177185 (25 bp)
GGCGCGGGATTATCAGCAGCTTACC
LOC_Os09g09600
OsAffx.29780.1.S1_at--292--10471NONE
TTACCTTGCGGTCTTGGTCTATGAG
NONE
OsAffx.29780.1.S1_at--476--711Chr09:5178019..5178043 (25 bp)
ATGATGACTTTTCGAGCTGGCTGGT
LOC_Os09g09600
OsAffx.29780.1.S1_at--38--7651Chr09:5178101..5178125 (25 bp)
GGGAGAGTAGCACCATGCCGATCAT
LOC_Os09g09600
OsAffx.29780.1.S1_at--179--6311Chr09:5178159..5178183 (25 bp)
GATGACAGTTCCAGCAGGGTTTCAA
LOC_Os09g09600
OsAffx.29780.1.S1_at--189--7671Chr09:5178175..5178199 (25 bp)
GGGTTTCAATATCTTACCTCACTTG
LOC_Os09g09600
Target Sequence 
GGTGTACAACGGACGATGGCCTCATCAGACATGGCCTACCTCGACGGCAGCGGCGGCAGCGGCGAGGTCATTTCCTCTAG
ACCTCCACTATGTCCGGGTCAACGAACCCCGACTCAGCGTCGTCCACGGTGCCGGTGTTGTTGTCACCGCCCTCCCTGAG
AATACTCCTAGCTATAACTGCAGTCTGCAGACTCAAATCGATGATCATCCCCAACTTTTGGGCCAGCCCAATGCAAGGGA
AGGAGAAACAGGCATCACAACTAAGGGCGCGGGATTATCAGCAGCTTACCTTGCGGTCTTGGTCTATGAGGGAAATATGA
TGACTTTTCGAGCTGGCTGGTTTCCAAAACTCGAGAAACTGTACTTAGCTGACATGGAGCATCTCAGTGTGATTGAAAGG
GAGAGTAGCACCATGCCGATCATAAATTATGTAAAGCTAATTGGTTTGAAAAGTATGATGACAGTTCCAGCAGGGTTTCA
ATATCTTACCTCACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29780.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis