Browse Element(s) Details


OsAffx.29781.1.S1_at

Description tigr:9637.m00717
TID=OsAffx.29781.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0961011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09550OsAffx.6218.1.S1_at11/119+5155336..5157006hypothetical protein
LOC_Os09g09560OsAffx.29779.1.S1_at11/119+5158460..5160957hypothetical protein
LOC_Os09g09570OsAffx.17617.1.S1_at11/119+5162478..5163879expressed protein
LOC_Os09g09580NANA9+5166148..5168064retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09590NANA9+5172915..5173313hypothetical protein
LOC_Os09g09600OsAffx.29780.1.S1_at9/119+5175165..5178300hypothetical protein
LOC_Os09g09610OsAffx.29781.1.S1_at11/119+5181571..5182636hypothetical protein
LOC_Os09g09619OsAffx.9066.1.S1_x_at1/119+5185168..5186329NA
LOC_Os09g09630OsAffx.17620.1.S1_at11/119+5186993..5189200WRKY DNA binding domain containing protein
LOC_Os09g09640NANA9+5190398..5190983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g09650Os.36393.1.S1_at11/119+5196975..5200335expressed protein
LOC_Os09g09650Os.46050.1.A1_x_at2/119+5196975..5200335expressed protein
LOC_Os09g09660NANA9+5201340..5204432retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29781.1.S1_at--1086--531Chr09:5181888..5182096 (25 bp)
ATCCCGGAGAGTCCATGGCCCAATG
LOC_Os09g09610
OsAffx.29781.1.S1_at--344--271Chr09:5182112..5182136 (25 bp)
ATAGTGGCACTTGTCCTTGGAGAGG
LOC_Os09g09610
OsAffx.29781.1.S1_at--10--10631Chr09:5182158..5182182 (25 bp)
TTCGACGGTCCAGACTTGCTATTAG
LOC_Os09g09610
OsAffx.29781.1.S1_at--67--7471Chr09:5182305..5182329 (25 bp)
GTGTGCTCCCTGTCGAAATCCGGGT
LOC_Os09g09610
OsAffx.29781.1.S1_at--1023--2271Chr09:5182320..5182344 (25 bp)
AAATCCGGGTGGTCATCAACGATGA
LOC_Os09g09610
OsAffx.29781.1.S1_at--1121--3911Chr09:5182350..5182374 (25 bp)
CGGCCTGTGAGATCCTCGATGGAAA
LOC_Os09g09610
OsAffx.29781.1.S1_at--758--5631Chr09:5182404..5182428 (25 bp)
GACACTGCCATTTGATGATACCTGC
LOC_Os09g09610
OsAffx.29781.1.S1_at--946--5911Chr09:5182457..5182481 (25 bp)
GAGCTTCTCCTTAGACATGTCATCA
LOC_Os09g09610
OsAffx.29781.1.S1_at--906--2191Chr09:5182503..5182527 (25 bp)
ACAACCACCTGGAGCCAAAGGCTGA
LOC_Os09g09610
OsAffx.29781.1.S1_at--104--9351Chr09:5182545..5182569 (25 bp)
TCGCTTCTGAATCCCATGGACTCAA
LOC_Os09g09610
OsAffx.29781.1.S1_at--38--8391Chr09:5182576..5182600 (25 bp)
GGCGAAGTTTTCTGTGCTCATGACT
LOC_Os09g09610
Target Sequence 
ATCCCGGAGAGTCCATGGCCCAATGGCCAAGTTTGCCGCTATAGTGGCACTTGTCCTTGGAGAGGTTGCGGCCTTGGGCT
TGCGCGTTCGACGGTCCAGACTTGCTATTAGTCTTGTTCCCATCACGCCCACGCCCGCCACGGCCGCGTTGCTGCGAGCT
CAACGCGTTCACCCCCCCAGTGCCAGTGTCGTGGGAAGGGTGCCCACCATCCTTGGCAAAGAGTGCATGGCCCGTGTGCT
CCCTGTCGAAATCCGGGTGGTCATCAACGATGAGGAGCCGGCCTGTGAGATCCTCGATGGAAAGATTACTCAAGTCAAGC
AAAGTTTCAATGGACACTGCCATTTGATGATACCTGCAGGGTACAACCCAGAGCAGCTTCTGCACGAGCTTCTCCTTAGA
CATGTCATCACCAAGGAGGCGGAGGTTGCTGACAACCACCTGGAGCCAAAGGCTGAAATCCTCGACTTGCTCGTCGCTTC
TGAATCCCATGGACTCAAAGGTTTGGCGAAGTTTTCTGTGCTCATGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29781.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis