Browse Element(s) Details


OsAffx.30133.1.S1_at

Description tigr:9637.m02938
TID=OsAffx.30133.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3408011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34050NANA9+20090882..20091714hypothetical protein
LOC_Os09g34060Os.54250.1.S1_at11/119+20093715..20098128Transcription factor RF2a, putative, expressed
LOC_Os09g34070Os.20697.1.S1_at11/119+20106823..20114088RNA recognition motif family protein, expressed
LOC_Os09g34070Os.38098.1.S1_at2/119+20106823..20114088RNA recognition motif family protein, expressed
LOC_Os09g34080OsAffx.30133.1.S1_at11/119+20115557..20116111hypothetical protein
LOC_Os09g34090OsAffx.17991.1.S1_at10/119+20116966..20121182NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g34100Os.14721.1.S1_at11/119+20121867..20126934Hydroxyacylglutathione hydrolase 2, mitochondrial precursor, putative, expressed
LOC_Os09g34110Os.47933.1.S1_at11/119+20127720..20133877expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30133.1.S1_at--945--7451Chr09:20115993..20116017 (25 bp)
GTGTCGTTGCCATCGTGTCCTGCGT
LOC_Os09g34080
OsAffx.30133.1.S1_at--291--1291Chr09:20115896..20115920 (25 bp)
AGATCGCGCGCTGGCTCGAGGTCCT
LOC_Os09g34080
OsAffx.30133.1.S1_at--1082--9371Chr09:20115881..20115905 (25 bp)
TCGAGGTCCTCACCGCCAAGGGTGT
LOC_Os09g34080
OsAffx.30133.1.S1_at--1066--4851Chr09:20115850..20115874 (25 bp)
GCTAGTCTTTGGCTCGACCTCTGCC
LOC_Os09g34080
OsAffx.30133.1.S1_at--417--6031Chr09:20115715..20115739 (25 bp)
GAGATGGTGCTCTCCTGCATTGTCA
LOC_Os09g34080
OsAffx.30133.1.S1_at--759--9091Chr09:20115708..20115732 (25 bp)
TGCTCTCCTGCATTGTCATGGAGTA
LOC_Os09g34080
OsAffx.30133.1.S1_at--916--9611Chr09:20115693..20115717 (25 bp)
TCATGGAGTACAGGGACCTCGCCTT
LOC_Os09g34080
OsAffx.30133.1.S1_at--94--9111Chr09:20115666..20115690 (25 bp)
TGCTCGACAGGAGCAATGCCCTGGA
LOC_Os09g34080
OsAffx.30133.1.S1_at--951--5951Chr09:20115656..20115680 (25 bp)
GAGCAATGCCCTGGAGGTGCTCGCC
LOC_Os09g34080
OsAffx.30133.1.S1_at--512--4331Chr09:20115633..20115657 (25 bp)
CCATCATCACGTGCCAAACAAATAT
LOC_Os09g34080
OsAffx.30133.1.S1_at--819--8491Chr09:20115609..20115633 (25 bp)
TGGCAGAACTAGTTTGCGTCCGCCT
LOC_Os09g34080
Target Sequence 
GTGTCGTTGCCATCGTGTCCTGCGTCCTCACCGTGCACCTGGGCCCCTTCTGCTTGCACGCACCTCTCCACCACCTCCAT
GGAGGCGCACCGGGGCGAGATCGCGCGCTGGCTCGAGGTCCTCACCGCCAAGGGTGTCCAGGAGCTAGTCTTTGGCTCGA
CCTCTGCCTCCCCGCCGCGCTCTTTGGCTGCTCCTCGCTCACCCGCCTCCACATCGGCGTCTGGCGTCTCCCGGACACCC
GCGACATTCTGCACGGCGCCGCCTTCCCCCACCTCCATGAGATGGTGCTCTCCTGCATTGTCATGGAGTACAGGGACCTC
GCCTTCCTGCTCGACAGGAGCAATGCCCTGGAGGTGCTCGCCATCATCACGTGCCAAACAAATATGGCAGAACTAGTTTG
CGTCCGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30133.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis