Browse Element(s) Details


OsAffx.30284.2.S1_at

Description tigr:9638.m00399
TID=OsAffx.30284.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0488011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04850OsAffx.20756.1.S1_at11/1110+2334552..2338653F-box domain containing protein
LOC_Os10g04860Os.8217.1.S1_at11/1110+2343001..2352865Aldehyde oxidase 1, putative, expressed
LOC_Os10g04870NANA10+2354227..2354472hypothetical protein
LOC_Os10g04880OsAffx.30284.2.S1_at11/1110+2356330..2357124hypothetical protein
LOC_Os10g04890Os.46727.1.S1_at10/1110+2358807..2362662expressed protein
LOC_Os10g04900Os.46856.1.S1_at11/1110+2370293..2371928F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30284.2.S1_at--229--10111Chr10:2357064..2357088 (25 bp)
TATGGGCGGATCCACAGGATGCCAT
LOC_Os10g04880
OsAffx.30284.2.S1_at--1084--7971Chr10:2357057..2357081 (25 bp)
GGATCCACAGGATGCCATGGCAGTG
LOC_Os10g04880
OsAffx.30284.2.S1_at--936--3491Chr10:2357042..2357066 (25 bp)
CATGGCAGTGGCTCCCGCGCTTGGA
LOC_Os10g04880
OsAffx.30284.2.S1_at--703--4571Chr10:2357026..2357050 (25 bp)
GCGCTTGGATCCACCTAATGCACCA
LOC_Os10g04880
OsAffx.30284.2.S1_at--397--7971Chr10:2357020..2357044 (25 bp)
GGATCCACCTAATGCACCAACAGCG
LOC_Os10g04880
OsAffx.30284.2.S1_at--518--2471Chr10:2357002..2357026 (25 bp)
AACAGCGACCCCTACGGGTGGATCG
LOC_Os10g04880
OsAffx.30284.2.S1_at--701--7731Chr10:2356962..2356986 (25 bp)
GGTGGATCCCACGACAGCGATGGCT
LOC_Os10g04880
OsAffx.30284.2.S1_at--1108--7591Chr10:2356927..2356951 (25 bp)
GGGCAGTAGCAGAGGCAACCTCCAT
LOC_Os10g04880
OsAffx.30284.2.S1_at--987--1511Chr10:2356921..2356944 (24 bp)
AGCAGAGGCAACCTCCATGTCCCAA
LOC_Os10g04880
OsAffx.30284.2.S1_at--960--4331Chr10:2356444..2356930 (25 bp)
CCATGTCCCAAGTAAACTCATCCTT
LOC_Os10g04880
OsAffx.30284.2.S1_at--131--3231Chr10:2356436..2356458 (23 bp)
CAAGTAAACTCATCCTTAAAATCAG
LOC_Os10g04880
Target Sequence 
TATGGGCGGATCCACAGGATGCCATGGCAGTGGCTCCCGCGCTTGGATCCACCTAATGCACCAACAGCGACCCCTACGGG
TGGATCGGGTGGATCCGGTGGCGGTGGATCCCACGACAGCGATGGCTCTCGCGCATGGGGCAGTAGCAGAGGCAACCTCC
ATGTCCCAAGTAAACTCATCCTTAAAATCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30284.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis