Browse Element(s) Details


OsAffx.30725.7.S1_s_at

Description tigr:9629.m04455
TID=OsAffx.30725.7
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4653011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46519NANA1+26811976..26812161NA
LOC_Os01g46530OsAffx.30725.7.S1_s_at11/111+26819745..26820585hypothetical protein
LOC_Os01g46540NANA1+26823139..26826442transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46554Os.47463.1.S1_x_at6/111+26827841..26833027transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g46554Os.14491.2.S1_x_at5/111+26827841..26833027transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g46570Os.38060.2.S1_x_at11/111+26841391..26848609CTP synthase, putative, expressed
LOC_Os01g46570Os.38060.1.S1_a_at11/111+26841391..26848609CTP synthase, putative, expressed
LOC_Os01g46570Os.57322.1.S1_at11/111+26841391..26848609CTP synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30725.7.S1_s_at--22--6871Chr01:26819775..26819799 (25 bp)
GTATTGGCACAAACTCAGCAGGATC
LOC_Os01g46530
OsAffx.30725.7.S1_s_at--138--9651Chr01:26819789..26819813 (25 bp)
TCAGCAGGATCATATCGAGGACAAG
LOC_Os01g46530
OsAffx.30725.7.S1_s_at--1032--7951Chr01:26819795..26819819 (25 bp)
GGATCATATCGAGGACAAGAAGCAG
LOC_Os01g46530
OsAffx.30725.7.S1_s_at--919--2731Chr01:26819811..26819835 (25 bp)
AAGAAGCAGCAGACTAGCAATGCAA
LOC_Os01g46530
OsAffx.30725.7.S1_s_at--207--5711Chr01:26819822..26819846 (25 bp)
GACTAGCAATGCAAACACGAGCCGG
LOC_Os01g46530
OsAffx.30725.7.S1_s_at--602--2171Chr01:26819836..26819860 (25 bp)
ACACGAGCCGGCATTCCATTAAAAT
LOC_Os01g46530
OsAffx.30725.7.S1_s_at--694--1471Chr01:26819841..26819865 (25 bp)
AGCCGGCATTCCATTAAAATCCTCG
LOC_Os01g46530
OsAffx.30725.7.S1_s_at--1003--8271Chr01:26819845..26819869 (25 bp)
GGCATTCCATTAAAATCCTCGATCC
LOC_Os01g46530
OsAffx.30725.7.S1_s_at--426--2271Chr01:26819857..26819881 (25 bp)
AAATCCTCGATCCATATACTGCAAG
LOC_Os01g46530
OsAffx.30725.7.S1_s_at--87--571Chr01:26819859..26819883 (25 bp)
ATCCTCGATCCATATACTGCAAGTA
LOC_Os01g46530
OsAffx.30725.7.S1_s_at--892--291Chr01:26819872..26819896 (25 bp)
ATACTGCAAGTAGTTGCCTAGTTGG
LOC_Os01g46530
Target Sequence 
GTATTGGCACAAACTCAGCAGGATCATATCGAGGACAAGAAGCAGCAGACTAGCAATGCAAACACGAGCCGGCATTCCAT
TAAAATCCTCGATCCATATACTGCAAGTAGTTGCCTAGTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30725.7.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis