Browse Element(s) Details


OsAffx.30942.1.S1_at

Description tigr:9639.m01206
TID=OsAffx.30942.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1259011/11hypothetical protein
LOC_Os09g139505/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g12560OsAffx.18821.1.S1_at11/1111+7051975..7056871Leucine Rich Repeat family protein
LOC_Os11g12570OsAffx.18822.1.S1_at11/1111+7060805..7061872hypothetical protein
LOC_Os11g12580OsAffx.7098.1.S1_at10/1111+7062356..7064567hypothetical protein
LOC_Os11g12590OsAffx.30942.1.S1_at11/1111+7067884..7071059hypothetical protein
LOC_Os11g12600OsAffx.30943.1.S1_at11/1111+7074034..7074480hypothetical protein
LOC_Os11g12610NANA11+7079778..7080250hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30942.1.S1_at--118--5511Chr11:7068036..7068060 (25 bp)
GAACAACAGGACAAGGCGGCACACT
LOC_Os11g12590
OsAffx.30942.1.S1_at--456--3211Chr11:7068047..7068108 (25 bp)
CAAGGCGGCACACTGATCGATGCAT
LOC_Os11g12590
OsAffx.30942.1.S1_at--530--1973Chr11:7068098..7068119 (22 bp)
ACTGATCGATGCATGGCGACGGCGC
LOC_Os11g12590
OsAffx.30942.1.S1_at--1023--2431Chr11:7068238..7068262 (25 bp)
AAAATTTTGGGTTTGCTGCGGCATT
LOC_Os11g12590
OsAffx.30942.1.S1_at--550--7871Chr11:7068247..7068271 (25 bp)
GGTTTGCTGCGGCATTTGCTCTCTC
LOC_Os11g12590
OsAffx.30942.1.S1_at--363--3771Chr11:7068267..7068291 (25 bp)
CTCTCCCGAGTTGCGGTGCCGAGAA
LOC_Os11g12590
OsAffx.30942.1.S1_at--1099--7633Chr11:7070577..7070601 (25 bp)
GGGAGCTGAAGGACATAACTACTGA
LOC_Os11g12590
OsAffx.30942.1.S1_at--492--6992Chr11:7070608..7070846 (25 bp)
GTACGGTGCATACCACAAGAGGCTA
LOC_Os11g12590
OsAffx.30942.1.S1_at--342--7552Chr11:7070947..7070971 (25 bp)
GTGGCCGCGTCCATAGCAGCGCACG
LOC_Os11g12590
OsAffx.30942.1.S1_at--138--7212Chr11:7070985..7071009 (25 bp)
GTCGTCGCCGTGGACAAACCTGCAG
LOC_Os11g12590
OsAffx.30942.1.S1_at--375--2372Chr11:7071000..7071024 (25 bp)
AAACCTGCAGATCCTAGAACGGAGT
LOC_Os11g12590
Target Sequence 
GAACAACAGGACAAGGCGGCACACTGATCGATGCATGGCGACGGCGCCGGGTCTCGCCTCTCTCTCGAGTCTCGAACAAC
AGGAGGAGGCGGCGCACGGGGTTGGAACTTGGAAGTGGCCAGTGGGGTTGGGTTTTGACTGGGCTGTGGCGCGTGGGCGT
GGGCCAAAATTTTGGGTTTGCTGCGGCATTTGCTCTCTCCCGAGTTGCGGTGCCGAGAATCCCGCGGCCAAATCTGGTGG
AGCTCCTGGCNNNNNNNNNNNNNANNTNNNNAANNNNGNNNNNNNNNTNNNNNCNNNNCNNNTNNNGGGGGAGCTGAAGG
ACATAACTACTGAAATAAAGTACGGTGCATACCACAAGAGGCTAAGGCACTTGGTGGGGGCGGATGGTAAGCCGGGAAGC
AGCAGGGCCGAGGCACCGGCTCTTGGAACGGAGGAGGAAATCCTGGCACTGCTGCTGTTNGGCGGTGGCCGCGTCCATAG
CAGCGCACGCCAGAGCGGCGNCGTCGTCGCCGTGGACAAACCTGCAGATCCTAGAACGGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30942.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis