Browse Element(s) Details


OsAffx.31134.1.S1_at

Description tigr:9639.m02302
TID=OsAffx.31134.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2597011/11hypothetical protein
LOC_Os10g142101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25930NANA11+14291168..14295196retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25940NANA11+14296810..14297211retrotransposon protein, putative, unclassified
LOC_Os11g25950OsAffx.31069.1.S1_x_at2/1111+14298165..14301032retrotransposon protein, putative, unclassified
LOC_Os11g25950Os.53479.1.S1_x_at1/1111+14298165..14301032retrotransposon protein, putative, unclassified
LOC_Os11g25950OsAffx.31069.2.S1_x_at1/1111+14298165..14301032retrotransposon protein, putative, unclassified
LOC_Os11g25970OsAffx.31134.1.S1_at11/1111+14315450..14318961hypothetical protein
LOC_Os11g25980Os.7727.1.S1_at1/1111+14325190..14344444phospholipid-translocating P-type ATPase, flippase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31134.1.S1_at--136--4236Chr11:14315486..14315509 (24 bp)
CCGAATTTTCTCGTGGGCTCTGGTA
LOC_Os11g25970
OsAffx.31134.1.S1_at--971--7471Chr11:14315498..14315767 (25 bp)
GTGGGCTCTGGTATTGACGACGTAA
LOC_Os11g25970
OsAffx.31134.1.S1_at--916--2811Chr11:14316663..14316687 (25 bp)
AAGATTGATTCACTCTCTTTTCGCC
LOC_Os11g25970
OsAffx.31134.1.S1_at--1099--9551Chr11:14316678..14316702 (25 bp)
TCTTTTCGCCTAGTGAATCCTATGG
LOC_Os11g25970
OsAffx.31134.1.S1_at--294--231Chr11:14317246..14317270 (25 bp)
ATATATGACGCTACCTTGCACAAGG
LOC_Os11g25970
OsAffx.31134.1.S1_at--637--9191Chr11:14318207..14318231 (25 bp)
TGCCTTGAAATCTCAGTCGTGCTGT
LOC_Os11g25970
OsAffx.31134.1.S1_at--103--6151Chr11:14318824..14318848 (25 bp)
GAGGTGGCCCAGAAGTTCAGCCGAA
LOC_Os11g25970
OsAffx.31134.1.S1_at--201--6751Chr11:14318838..14318862 (25 bp)
GTTCAGCCGAACTGGGAGTTTGCCC
LOC_Os11g25970
OsAffx.31134.1.S1_at--776--6071Chr11:14318853..14318877 (25 bp)
GAGTTTGCCCGAACTAACTTCAGCT
LOC_Os11g25970
OsAffx.31134.1.S1_at--893--473Chr11:14318887..14318911 (25 bp)
ATCTGCTTCCACGTGTATGCTCTTG
LOC_Os11g25970
OsAffx.31134.1.S1_at--865--10131Chr11:14318902..14318926 (25 bp)
TATGCTCTTGATGACTCCCGAATGG
LOC_Os11g25970
Target Sequence 
CCGAATTTTCTCGTGGGCTCTGGTATTGACGACGTAAATTTGGCATTTAACAGCCGCCAACAATCCTTTGCCCTTGCAAA
AATCGTGGAAATAGATATTGTGGTCAAGATTGATTCACTCTCTTTTCGCCTAGTGAATCCTATGGCTAATATTTTATCGA
GAAGCAGTGGTAGAGTTCTGCTAATATATGACGCTACCTTGCACAAGGTGCAGAAGAATGCCTTGAAATCTCAGTCGTGC
TGTAGTGTGAGGGGCGACACGGTCTCACGGTCGGGTGCGAGCGCGTGGGGTGGAGGAGGAATCCCTAACAAAAATCGGGG
CATGACAGAGGTGGCCCAGAAGTTCAGCCGAACTGGGAGTTTGCCCGAACTAACTTCAGCTCCTCTCGTCATCTGCTTCC
ACGTGTATGCTCTTGATGACTCCCGAATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31134.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis