Browse Element(s) Details


OsAffx.3121.1.S1_at

Description tigr:9631.m00231
TID=OsAffx.3121.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0319011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03150Os.6063.1.S1_at11/113+1305742..1309535Fizzy-related protein homolog, putative, expressed
LOC_Os03g03164Os.4164.2.S1_a_at11/113+1318397..1323586Homeobox protein HD1, putative, expressed
LOC_Os03g03180Os.7349.1.S1_at11/113+1324348..1327861Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g03190OsAffx.3121.1.S1_at11/113+1328923..1329342hypothetical protein
LOC_Os03g03200Os.17325.1.S1_at11/113+1333861..1336527expressed protein
LOC_Os03g03210NANA3+1342173..1346917retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g03220Os.46995.1.S1_x_at1/113+1347247..1350160retrotransposon protein, putative, unclassified
LOC_Os03g03230NANA3+1350524..1352245retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3121.1.S1_at--349--10871Chr03:1328956..1328980 (25 bp)
TTGGCGCAGCCTGGTTGCGAAGTCA
LOC_Os03g03190
OsAffx.3121.1.S1_at--1046--4111Chr03:1328960..1328984 (25 bp)
CGCAGCCTGGTTGCGAAGTCATCGG
LOC_Os03g03190
OsAffx.3121.1.S1_at--111--7651Chr03:1328984..1329008 (25 bp)
GGGAGCTGGAGATCTCCCCTCCGAC
LOC_Os03g03190
OsAffx.3121.1.S1_at--858--8731Chr03:1329050..1329074 (25 bp)
TGTCACTCGTCCATCGAGAGGCCCT
LOC_Os03g03190
OsAffx.3121.1.S1_at--247--511Chr03:1329062..1329086 (25 bp)
ATCGAGAGGCCCTTCATGTGACGGA
LOC_Os03g03190
OsAffx.3121.1.S1_at--450--6031Chr03:1329065..1329089 (25 bp)
GAGAGGCCCTTCATGTGACGGAGCA
LOC_Os03g03190
OsAffx.3121.1.S1_at--36--6231Chr03:1329067..1329091 (25 bp)
GAGGCCCTTCATGTGACGGAGCATA
LOC_Os03g03190
OsAffx.3121.1.S1_at--446--751Chr03:1329140..1329164 (25 bp)
ATGTCTCTACCGCTTCCTTCGTGAT
LOC_Os03g03190
OsAffx.3121.1.S1_at--238--10671Chr03:1329153..1329177 (25 bp)
TTCCTTCGTGATCACCGTTGTGGGC
LOC_Os03g03190
OsAffx.3121.1.S1_at--716--7371Chr03:1329160..1329184 (25 bp)
GTGATCACCGTTGTGGGCTCCCCTT
LOC_Os03g03190
OsAffx.3121.1.S1_at--492--2751Chr03:1329287..1329311 (25 bp)
AAGAAAGGATGTGGGCCCACATATC
LOC_Os03g03190
Target Sequence 
TTGGCGCAGCCTGGTTGCGAAGTCATCGGGGAGCTGGAGATCTCCCCTCCGACCCTCTCCCTCATCTTGTTGTTGCCCAC
CACGGCGCCACCCCTGTCACTCGTCCATCGAGAGGCCCTTCATGTGACGGAGCATAGGGGGATAAGAGCGGGGAGAGATG
GCGTCGGCATCGACCTCGTCGACCATGTCTCTACCGCTTCCTTCGTGATCACCGTTGTGGGCTCCCCTTCACCGCTTCGA
CCCTCACTTGCCTGTCACCGCCGCTGCTCCAGCCAAAAGGAAAGAGAAAGGGAAGAGAAAAGAGAAAGAGAGAAGGGAGA
GAGGGATGAGGAAGAAAGGATGTGGGCCCACATATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3121.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis