Browse Element(s) Details


OsAffx.31725.1.S1_at

Description tigr:9640.m01285
TID=OsAffx.31725.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=receptor protein kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1330011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13300OsAffx.31725.1.S1_at11/1112+7417264..7418862Leucine Rich Repeat family protein
LOC_Os12g13300Os.51067.1.S1_x_at2/1112+7417264..7418862Leucine Rich Repeat family protein
LOC_Os12g13310NANA12+7420523..7424739Protein kinase domain containing protein
LOC_Os12g13320Os.11405.1.S1_at11/1112+7427980..7432087Argininosuccinate synthase, chloroplast precursor, putative, expressed
LOC_Os12g13330NANA12+7434390..7436724Zinc knuckle family protein
LOC_Os12g13340Os.7004.1.S1_at11/1112+7438457..7443509expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31725.1.S1_at--402--7191Chr12:7418314..7418338 (25 bp)
GTCGGCGTCATCCTAGTCTACGTCT
LOC_Os12g13300
OsAffx.31725.1.S1_at--113--4651Chr12:7418318..7418342 (25 bp)
GCGTCATCCTAGTCTACGTCTACTG
LOC_Os12g13300
OsAffx.31725.1.S1_at--917--9931Chr12:7418332..7418356 (25 bp)
TACGTCTACTGGAAGGTCAAGGATC
LOC_Os12g13300
OsAffx.31725.1.S1_at--628--7151Chr12:7418335..7418359 (25 bp)
GTCTACTGGAAGGTCAAGGATCGCA
LOC_Os12g13300
OsAffx.31725.1.S1_at--470--9931Chr12:7418338..7418362 (25 bp)
TACTGGAAGGTCAAGGATCGCAAGA
LOC_Os12g13300
OsAffx.31725.1.S1_at--498--5291Chr12:7418343..7418367 (25 bp)
GAAGGTCAAGGATCGCAAGAAACAA
LOC_Os12g13300
OsAffx.31725.1.S1_at--562--4511Chr12:7418386..7418410 (25 bp)
GCCGCCGGTGACGAGAACGAAAGCC
LOC_Os12g13300
OsAffx.31725.1.S1_at--619--8931Chr12:7418394..7418418 (25 bp)
TGACGAGAACGAAAGCCGCCACGGG
LOC_Os12g13300
OsAffx.31725.1.S1_at--483--1851Chr12:7418396..7418420 (25 bp)
ACGAGAACGAAAGCCGCCACGGGCT
LOC_Os12g13300
OsAffx.31725.1.S1_at--251--9491Chr12:7418420..7418444 (25 bp)
TCTGCCGCTGCATATGGGGTCACCG
LOC_Os12g13300
OsAffx.31725.1.S1_at--1040--7631Chr12:7418690..7418714 (25 bp)
GGGAGCGGTGCAAGGAGTTCGCGGC
LOC_Os12g13300
Target Sequence 
GTCGGCGTCATCCTAGTCTACGTCTACTGGAAGGTCAAGGATCGCAAGAAACAAGGCCGCTCCTCCACCGTCGCCGCCGG
TGACGAGAACGAAAGCCGCCACGGGCTCTGCCGCTGCATATGGGGTCACCGGGGCGTCGACTCCGACACCGACACCGACG
ACTCGTCGGCGTCGGAGAACGGCGGCGGCGGAGGGAAGTACGGCGAGGGGGAGCTGGTGGCGATCGACAGGGGGTTCAGG
GTGGAGCTGGACGAGCTGCTCCGGTCGTCGGCGTACGTGCTGGGGAAGGGAGGGAAGGGGATCGTGTACAAGGTGGTGGT
CGGCAACGGCGCGACGCCGGTGGCGGTGCGGCGGCTGGGCGGCGGCGGTGGAGGCGGGGAGCGGTGCAAGGAGTTCGCGG
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis