Browse Element(s) Details


OsAffx.31792.1.S1_at

Description tigr:9640.m01762
TID=OsAffx.31792.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1795011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17910Os.8007.1.S1_at11/1112+10291015..10295321RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os12g17920OsAffx.32038.2.S1_at11/1112+10296940..10298139hypothetical protein
LOC_Os12g17920Os.24470.1.A1_at1/1112+10296940..10298139hypothetical protein
LOC_Os12g17930OsAffx.7627.1.S1_at11/1112+10299624..10303523hypothetical protein
LOC_Os12g17930OsAffx.23176.3.S1_x_at2/1112+10299624..10303523hypothetical protein
LOC_Os12g17930OsAffx.17424.1.S1_at1/1112+10299624..10303523hypothetical protein
LOC_Os12g17930Os.19061.2.S1_at1/1112+10299624..10303523hypothetical protein
LOC_Os12g17940OsAffx.31791.1.S1_at11/1112+10307836..10308297hypothetical protein
LOC_Os12g17950OsAffx.31792.1.S1_at11/1112+10318250..10319272hypothetical protein
LOC_Os12g17960OsAffx.31793.1.S1_at11/1112+10321824..10322060hypothetical protein
LOC_Os12g17970NANA12+10325539..10326192retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17980NANA12+10327037..10329166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17990Os.27691.2.S1_x_at2/1112+10330429..10331255retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g18000OsAffx.19723.1.S1_at11/1112+10336137..10336340hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31792.1.S1_at--281--9631Chr12:10318920..10318944 (25 bp)
TCATGGCAATTTTCCTCTTCTCTAA
LOC_Os12g17950
OsAffx.31792.1.S1_at--965--911Chr12:10318899..10318920 (22 bp)
AGGCTATGTTCTTCCTTCAAGGAGG
LOC_Os12g17950
OsAffx.31792.1.S1_at--925--1631Chr12:10318729..10318753 (25 bp)
AGCGTGGCCGTTGCAATAGTCGTGT
LOC_Os12g17950
OsAffx.31792.1.S1_at--149--2771Chr12:10318581..10318605 (25 bp)
AAGACGTCCATAACTTCAGGGCAGT
LOC_Os12g17950
OsAffx.31792.1.S1_at--950--2551Chr12:10318519..10318543 (25 bp)
AACGTGTACGTTGTCGGTGTCATGA
LOC_Os12g17950
OsAffx.31792.1.S1_at--242--171Chr12:10318492..10318516 (25 bp)
ATTTTGGTGCGCGAAGCCTTGGAAA
LOC_Os12g17950
OsAffx.31792.1.S1_at--1117--9971Chr12:10318462..10318486 (25 bp)
TACCACCTGCTCTTGAAATATCGTC
LOC_Os12g17950
OsAffx.31792.1.S1_at--867--5591Chr12:10318448..10318472 (25 bp)
GAAATATCGTCTCGTCTATCATCAG
LOC_Os12g17950
OsAffx.31792.1.S1_at--351--8951Chr12:10318413..10318437 (25 bp)
TGACTACTGCGGTTTCTCGACATGA
LOC_Os12g17950
OsAffx.31792.1.S1_at--1137--9031Chr12:10318352..10318376 (25 bp)
TGCAGCGCTGCTACATGTCATTATG
LOC_Os12g17950
OsAffx.31792.1.S1_at--556--9031Chr12:10318315..10318339 (25 bp)
TGCACGATGGTCTTGGCGCTTTACA
LOC_Os12g17950
Target Sequence 
TCATGGCAATTTTCCTCTTCTCTAAGGCTATGTTCTTCCTTCAAGGAGGAGGGCAACATAGACGAGGAATTAGAAGCTTA
TTGAAGGAGTGCCTGAGCGTGGCCGTTGCAATAGTCGTGTGGGAGGTCATGGGGAACTTCGTATTGGGAACCCTGCAAGC
AAACGGTTTCCAAGACCTCTCCCGCAAATTCGATGCCGCCTTCGGCTACGGGTATCTGCTCACCGCCGTCGTCATCTCGC
AAGAAGACGTCCATAACTTCAGGGCAGTCGAGAGGGCGTGGGAGCTTGCAGGCCAAAAACTCAAGAACGTGTACGTTGTC
GGTGTCATGATTATTTTGGTGCGCGAAGCCTTGGAAATCGTCTACCACCTGCTCTTGAAATATCGTCTCGTCTATCATCA
GCACCATGTGGTGACTACTGCGGTTTCTCGACATGACGACACGACCGCTGACGTGGTGAGGTTCTCGCTCGTTGCAGCGC
TGCTACATGTCATTATGCAGTCATTCGTGTGCACGATGGTCTTGGCGCTTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31792.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis