Browse Element(s) Details


OsAffx.32047.1.S1_at

Description tigr:9640.m03486
TID=OsAffx.32047.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3600011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35970OsAffx.30582.1.S1_s_at2/1112+21954707..21959077transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35970Os.47463.1.S1_x_at1/1112+21954707..21959077transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35980OsAffx.7802.1.S1_at10/1112+21961627..21963489hypothetical protein
LOC_Os12g35990OsAffx.32046.1.S1_x_at11/1112+21969403..21969894hypothetical protein
LOC_Os12g35990OsAffx.32046.1.S1_at11/1112+21969403..21969894hypothetical protein
LOC_Os12g36000OsAffx.32047.1.S1_at11/1112+21976965..21978745hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32047.1.S1_at--496--5551Chr12:21977943..21977967 (25 bp)
GAAACCGCGCATTCGCTGTCATTGT
LOC_Os12g36000
OsAffx.32047.1.S1_at--321--7551Chr12:21977995..21978019 (25 bp)
GTGGCGTCCTGTCTCTGAACTTAGA
LOC_Os12g36000
OsAffx.32047.1.S1_at--885--2511Chr12:21978180..21978204 (25 bp)
AACTTTTCTGTTTTGGAGCTGGATC
LOC_Os12g36000
OsAffx.32047.1.S1_at--678--7251Chr12:21978237..21978261 (25 bp)
GTCCTGCACCTACTTGGCATTTGTA
LOC_Os12g36000
OsAffx.32047.1.S1_at--812--5211Chr12:21978294..21978443 (25 bp)
GAATTTCTGTCGCAGGACTCATGCT
LOC_Os12g36000
OsAffx.32047.1.S1_at--471--631Chr12:21978439..21978463 (25 bp)
ATGCTTTGTAAGTTGCCGTTGCGAC
LOC_Os12g36000
OsAffx.32047.1.S1_at--294--2331Chr12:21978486..21978510 (25 bp)
AAAGTATCTCCTTGACTGATCTTAA
LOC_Os12g36000
OsAffx.32047.1.S1_at--84--9011Chr12:21978561..21978585 (25 bp)
TGAAGGTGCTCCTGAGATGCGCAAC
LOC_Os12g36000
OsAffx.32047.1.S1_at--302--6351Chr12:21978576..21978600 (25 bp)
GATGCGCAACCGTGCTCGAAAGAGT
LOC_Os12g36000
OsAffx.32047.1.S1_at--297--6111Chr12:21978597..21978621 (25 bp)
GAGTGACCGTCAGATTTTCCAGGAA
LOC_Os12g36000
OsAffx.32047.1.S1_at--254--6231Chr12:21978668..21978692 (25 bp)
GAGGCCTATCCTTCTGTGAAATGCA
LOC_Os12g36000
Target Sequence 
GAAACCGCGCATTCGCTGTCATTGTCGTCGTCGTCGCAGCGACGCCCTCGTGGTGGCGTCCTGTCTCTGAACTTAGAGAC
CAATGTCATGACAGGTGATTCAACCAGGAGCTTTGAGCAAGAGATATTCCGGTTTCAAGTTACGGACAACTTTTCTGTTT
TGGAGCTGGATCTGAAGGCACAAGGGCATGTCTATGGGGCAATCGTCCTGCACCTACTTGGCATTTGTACCTCTACACAA
AGGCTTAGGGTGTTGCTAGATGAATTTCTGTCGCAGGACTCATGCTTTGTAAGTTGCCGTTGCGACCAGCCCAATAACTG
GAGAAATCAAAGTATCTCCTTGACTGATCTTAAAGAAGTAGAAATCAGAGGCTTCAGAGGACAAAACCATGAAGTTGATT
TGTTGAAGGTGCTCCTGAGATGCGCAACCGTGCTCGAAAGAGTGACCGTCAGATTTTCCAGGAAGGTTACACCGAGTGAT
TGTCGATGCAGGGAACTCAGTGGCATTTTAGAGGCCTATCCTTCTGTGAAATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32047.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis