Browse Element(s) Details


OsAffx.32087.1.S1_at

Description tigr:9640.m03784
TID=OsAffx.32087.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3886011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38830NANA12+23827102..23827452hypothetical protein
LOC_Os12g38840Os.14491.2.S1_x_at1/1112+23830041..23832899transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g38850Os.52191.1.A1_at11/1112+23846311..23851430expressed protein
LOC_Os12g38860OsAffx.32087.1.S1_at11/1112+23851864..23855278Protein kinase domain containing protein, expressed
LOC_Os12g38870Os.16324.1.S1_at11/1112+23859127..23864684expressed protein
LOC_Os12g38880Os.11612.1.S1_at10/1112+23878675..23881227pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32087.1.S1_at--865--6251Chr12:23853392..23853416 (25 bp)
GATGTCCCGGAGCTACCAGGACGAC
LOC_Os12g38860
OsAffx.32087.1.S1_at--885--10631Chr12:23853313..23853337 (25 bp)
TTCGCCTGGGCCAAGATGCCACGAC
LOC_Os12g38860
OsAffx.32087.1.S1_at--57--4031Chr12:23853156..23853180 (25 bp)
CGTTCACCTCGTCGGAATCCTACAA
LOC_Os12g38860
OsAffx.32087.1.S1_at--447--9431Chr12:23853145..23853169 (25 bp)
TCGGAATCCTACAACAACCGGTTCA
LOC_Os12g38860
OsAffx.32087.1.S1_at--588--4531Chr12:23853085..23853109 (25 bp)
GCCGCCACCAAGGAGGTCAAGAGCA
LOC_Os12g38860
OsAffx.32087.1.S1_at--32--9731Chr12:23853069..23853093 (25 bp)
TCAAGAGCAGCAAGGTCTCGTCTCC
LOC_Os12g38860
OsAffx.32087.1.S1_at--531--6451Chr12:23853040..23853064 (25 bp)
GATCACTTCCACCATTGTCGTAATC
LOC_Os12g38860
OsAffx.32087.1.S1_at--1149--31Chr12:23853027..23853051 (25 bp)
ATTGTCGTAATCCTTCCTCACCGGC
LOC_Os12g38860
OsAffx.32087.1.S1_at--825--1771Chr12:23853008..23853032 (25 bp)
ACCGGCCATCTCACTGACGATTTTC
LOC_Os12g38860
OsAffx.32087.1.S1_at--10--6551Chr12:23852990..23853014 (25 bp)
GATTTTCCCGCCATTGGCAGAAGCA
LOC_Os12g38860
OsAffx.32087.1.S1_at--253--111Chr12:23852932..23852956 (25 bp)
ATTCTCCGGGCCGTTGCTGTCGCAG
LOC_Os12g38860
Target Sequence 
GATGTCCCGGAGCTACCAGGACGACGCCGGCGACCGCCTCCCGCTCTCCGGGCCGGTGCAGCTCACCGCCTCCACCGGCT
TCGCCTGGGCCAAGATGCCACGACCAGACTCCACCACGACGGCGGCGGCGGCGGCGAAGCGGAGCTCCTCCAAGGTGCCA
AGAACCAACAGCAATGGCGGCGCCTACGAGGCGGAGAAGCAGGAGGCGATGAAGCAGTGGGCGCAGGTCGCCGACGCGTT
CACCTCGTCGGAATCCTACAACAACCGGTTCAAGGAGCCCACGGCCACCGCCGGCGCCGGCGCCGCCGCCGCCACCAAGG
AGGTCAAGAGCAGCAAGGTCTCGTCTCCCTCCGATCACTTCCACCATTGTCGTAATCCTTCCTCACCGGCCATCTCACTG
ACGATTTTCCCGCCATTGGCAGAAGCACAAGGTCGGCGGCGGGAGGTTGCACAGGGTGGGATTCTCCGGGCCGTTGCTGT
CGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32087.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis