Browse Element(s) Details


OsAffx.4279.1.S1_at

Description tigr:9633.m00780
TID=OsAffx.4279.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0878010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08760NANA5+4782311..4783551hypothetical protein
LOC_Os05g08770NANA5+4792004..4793434leucine-rich repeat family protein, putative, expressed
LOC_Os05g08780OsAffx.4279.1.S1_at10/115+4805303..4808732hypothetical protein
LOC_Os05g08790OsAffx.14597.1.S1_at11/115+4810056..4813556MAR binding filament-like protein 1-1, putative, expressed
LOC_Os05g08790Os.36975.3.S1_x_at1/115+4810056..4813556MAR binding filament-like protein 1-1, putative, expressed
LOC_Os05g08800OsAffx.14598.1.S1_at11/115+4815742..4817880expressed protein
LOC_Os05g08810Os.11111.1.S1_at11/115+4832231..4843629Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os05g08810Os.11111.1.S2_at11/115+4832231..4843629Phosphatidylinositol 3-kinase, root isoform, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4279.1.S1_at--264--8871Chr05:4808669..4808688 (20 bp)
TGATGTTGAAATTAGCTCTGCTTTT
LOC_Os05g08780
OsAffx.4279.1.S1_at--495--4811Chr05:4806400..4806419 (20 bp)
GCTCTGCTTTTAGCTTCATAAGTAC
LOC_Os05g08780
OsAffx.4279.1.S1_at--1--3431Chr05:4806366..4806390 (25 bp)
CAGATGTCCAACTTCATTTTCGCGA
LOC_Os05g08780
OsAffx.4279.1.S1_at--1007--10531Chr05:4806354..4806378 (25 bp)
TTCATTTTCGCGACAAGCACCAGGA
LOC_Os05g08780
OsAffx.4279.1.S1_at--921--5071Chr05:4806338..4806362 (25 bp)
GCACCAGGAGAGCATCAGTGGCAAC
LOC_Os05g08780
OsAffx.4279.1.S1_at--910--8231Chr05:4806319..4806343 (25 bp)
GGCAACAGTGGCGACGCACGCGCAT
LOC_Os05g08780
OsAffx.4279.1.S1_at--23--3351Chr05:4806265..4806289 (25 bp)
CACGGCCGAGGAGCATCAATAAGTT
LOC_Os05g08780
OsAffx.4279.1.S1_at--690--2731Chr05:4806239..4806263 (25 bp)
AAGCAAGTGCTACCTCAGCGGCAAG
LOC_Os05g08780
OsAffx.4279.1.S1_at--241--1511Chr05:4806205..4806229 (25 bp)
AGCACGCAGCGTTGAACTCTTTGAG
LOC_Os05g08780
OsAffx.4279.1.S1_at--1013--6891Chr05:4805691..4805715 (25 bp)
GTATCTATGGGTTCGGTGGATGCAT
LOC_Os05g08780
OsAffx.4279.1.S1_at--1049--6011NONE
GAGAGGCGCAAGGTCACTGGCCCCA
NONE
Target Sequence 
TGATGTTGAAATTAGCTCTGCTTTTAGCTTCATAAGTACCAGGAGTAGCAGATGTCCAACTTCATTTTCGCGACAAGCAC
CAGGAGAGCATCAGTGGCAACAGTGGCGACGCACGCGCATGCAGCCCATGTTGCTGCTCCCTCTCCGTGCACGGCCGAGG
AGCATCAATAAGTTCAAGCAAGTGCTACCTCAGCGGCAAGAGTGGCGAGAGCACGCAGCGTTGAACTCTTTGAGGAGAGA
GATAGAAAGCAAAGAGGAGAAAAGTAGAAGGAAGGAATATGTGGTGGAGGCTGGGGCAAAACCTTTTAACACCTCTTATT
TTATCAAACTTAGCGAAAAATTTGAAGGGGGCTCAGGGGTATCTATGGGTTCGGTGGATGCATGGGGCACCCATGTTGAA
TCCGCCCCGGAGAGAAGGGGTGGGGACTGGGGAGATAGGGTTACCGCTGAGGAGAGGCGCAAGGTCACTGGCCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4279.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis