Browse Element(s) Details


OsAffx.5348.1.S1_at

Description tigr:9635.m01624
TID=OsAffx.5348.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1627011/11hypothetical protein
LOC_Os02g282501/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g16240NANA7+9473500..9477231retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16250OsAffx.16291.1.S1_at11/117+9484464..9485045hypothetical protein
LOC_Os07g16260OsAffx.16292.1.S1_at11/117+9488743..9489156hypothetical protein
LOC_Os07g16270OsAffx.5348.1.S1_at11/117+9491882..9492265hypothetical protein
LOC_Os07g16280NANA7+9496578..9497173hypothetical protein
LOC_Os07g16290Os.40360.1.S1_at9/117+9506324..9508943hypothetical protein
LOC_Os07g16290Os.40360.1.S1_x_at4/117+9506324..9508943hypothetical protein
LOC_Os07g16299NANA7+9513219..9513466NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5348.1.S1_at--909--3931Chr07:9492211..9492235 (25 bp)
CGGCGGCCAAGCTGCCTTCTTTCAG
LOC_Os07g16270
OsAffx.5348.1.S1_at--814--3651Chr07:9492196..9492220 (25 bp)
CTTCTTTCAGCACGGAGCTCCAGGA
LOC_Os07g16270
OsAffx.5348.1.S1_at--955--5972Chr07:9492005..9492197 (25 bp)
GAGAAACATCGATCGACAGCGCCGT
LOC_Os07g16270
OsAffx.5348.1.S1_at--818--4691Chr07:9491974..9491998 (25 bp)
GCGGCAGCAGCCACTCCGACAGAAT
LOC_Os07g16270
OsAffx.5348.1.S1_at--155--4231Chr07:9491959..9491983 (25 bp)
CCGACAGAATCCCTGACAGCTGATA
LOC_Os07g16270
OsAffx.5348.1.S1_at--9--3051Chr07:9491952..9491976 (25 bp)
AATCCCTGACAGCTGATAAGTGCCG
LOC_Os07g16270
OsAffx.5348.1.S1_at--710--3851Chr07:9491947..9491971 (25 bp)
CTGACAGCTGATAAGTGCCGGTTTA
LOC_Os07g16270
OsAffx.5348.1.S1_at--690--2151Chr07:9491944..9491968 (25 bp)
ACAGCTGATAAGTGCCGGTTTAAGT
LOC_Os07g16270
OsAffx.5348.1.S1_at--379--8831Chr07:9491939..9491963 (25 bp)
TGATAAGTGCCGGTTTAAGTGGAAC
LOC_Os07g16270
OsAffx.5348.1.S1_at--818--9771Chr07:9491924..9491948 (25 bp)
TAAGTGGAACCGGTACCTATTTCAT
LOC_Os07g16270
OsAffx.5348.1.S1_at--1016--8511Chr07:9491920..9491944 (25 bp)
TGGAACCGGTACCTATTTCATTTGG
LOC_Os07g16270
Target Sequence
CGGCGGCCAAGCTGCCTTCTTTCAGCACGGAGCTCCAGGAGAAACATCGATCGACAGCGCCGTCATCCAGCGGCAGCAGC
CACTCCGACAGAATCCCTGACAGCTGATAAGTGCCGGTTTAAGTGGAACCGGTACCTATTTCATTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5348.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis