Browse Element(s) Details


OsAffx.5550.1.S1_at

Description tigr:9635.m03636
TID=OsAffx.5550.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cellulose synthase-like protein OsCslF3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3675011/11Cellulose synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36700Os.15704.1.S1_at2/117+21987389..21990062Cellulose synthase family protein
LOC_Os07g36700OsAffx.16586.1.S1_x_at1/117+21987389..21990062Cellulose synthase family protein
LOC_Os07g36710NANA7+21991717..21994128retrotransposon protein, putative, unclassified
LOC_Os07g36720NANA7+21995956..22000572retrotransposon protein, putative, unclassified
LOC_Os07g36730OsAffx.16588.1.S1_at11/117+22001342..22001611hypothetical protein
LOC_Os07g36740NANA7+22004368..22010419Cellulose synthase family protein
LOC_Os07g36750OsAffx.5550.1.S1_at11/117+22014108..22017490Cellulose synthase family protein, expressed
LOC_Os07g36760NANA7+22023107..22025397retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g36770NANA7+22027391..22033166retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g36780NANA7+22035466..22037940D-mannose binding lectin family protein, expressed
LOC_Os07g36790OsAffx.28784.1.S1_at11/117+22041765..22042016hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000271biological_processpolysaccharide biosynthesis
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005783cellular_componentendoplasmic reticulum
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5550.1.S1_at--342--10111Chr07:22014647..22014671 (25 bp)
TATGTGGTGTACCTTCTCGTGATCA
LOC_Os07g36750
OsAffx.5550.1.S1_at--730--10411Chr07:22014561..22014585 (25 bp)
TTATTGGCGCAATGAGCAGTTCTTC
LOC_Os07g36750
OsAffx.5550.1.S1_at--699--711Chr07:22014536..22014560 (25 bp)
ATGATCGGCTCAACGAGTGCTTACC
LOC_Os07g36750
OsAffx.5550.1.S1_at--997--2151Chr07:22014509..22014533 (25 bp)
ACAGCTGTGCTTCATATGGTGGTCA
LOC_Os07g36750
OsAffx.5550.1.S1_at--810--7671Chr07:22014388..22014412 (25 bp)
GGGTTCCCATGTTAATCCCAACAAT
LOC_Os07g36750
OsAffx.5550.1.S1_at--661--10032Chr07:22014355..22014379 (25 bp)
TAGTTGCTAATATCGGTGCCATTGG
LOC_Os07g36750
OsAffx.5550.1.S1_at--242--1411Chr07:22014275..22014299 (25 bp)
AGACATGCTGCAATGGGACTCCTAT
LOC_Os07g36750
OsAffx.5550.1.S1_at--222--7631Chr07:22014261..22014285 (25 bp)
GGGACTCCTATTCAACATGTGGGTT
LOC_Os07g36750
OsAffx.5550.1.S1_at--510--6791Chr07:22014239..22014263 (25 bp)
GTTATGTTTCTCCTTTACCCATTTG
LOC_Os07g36750
OsAffx.5550.1.S1_at--299--10171Chr07:22014153..22014177 (25 bp)
TATCTTTGTAATTGTTGCCCTTGTA
LOC_Os07g36750
OsAffx.5550.1.S1_at--606--9151Chr07:22014138..22014162 (25 bp)
TGCCCTTGTATATGTTGCTACCCAT
LOC_Os07g36750
Target Sequence 
TATGTGGTGTACCTTCTCGTGATCATTTTGATGATTCATATGATCGGATGGCTCGAGATAAAGTGGGCAGGGATCACATG
GTTAGATTATTGGCGCAATGAGCAGTTCTTCATGATCGGCTCAACGAGTGCTTACCCAACAGCTGTGCTTCATATGGTGG
TCAATCTTCTCACAAAGAAGGGTATACATTTTAGAGTCACTTCAAAGCAAACAACCGCTGACACCAACGATAAATTTGCT
GACTTATATGAGATGAGATGGGTTCCCATGTTAATCCCAACAATGGTAGTTTTAGTTGCTAATATCGGTGCCATTGGTGT
AGCTATTGGAAAGACGGCAGTATATATGGGAGTATGGACGATAGCACAGAAGAGACATGCTGCAATGGGACTCCTATTCA
ACATGTGGGTTATGTTTCTCCTTTACCCATTTGCACTAGCAATCATGGGGAGATGGGCAAAGAGGTCAATCATTCTTGTT
GTTTTGTTGCCAATTATCTTTGTAATTGTTGCCCTTGTATATGTTGCTACCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5550.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis