Browse Element(s) Details


OsAffx.5673.1.S1_at

Description tigr:9636.m00002
TID=OsAffx.5673.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0102011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01010OsAffx.30850.1.S1_at1/118+261..2244NA
LOC_Os08g01020OsAffx.5673.1.S1_at11/118+3839..7735hypothetical protein
LOC_Os08g01030OsAffx.28968.1.S1_at11/118+12574..17853ZIP Zinc transporter family protein, expressed
LOC_Os08g01030OsAffx.28968.1.S1_s_at10/118+12574..17853ZIP Zinc transporter family protein, expressed
LOC_Os08g01040Os.50424.1.S2_at11/118+19941..27167Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g01040Os.50424.1.S1_at10/118+19941..27167Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g01054Os.17519.1.S1_at11/118+29798..39772transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g01054Os.17519.2.S1_at10/118+29798..39772transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5673.1.S1_at--627--10671Chr08:6552..6576 (25 bp)
TTCCAAATCTCATAAGCGGTCCTAT
LOC_Os08g01020
OsAffx.5673.1.S1_at--631--4671Chr08:6567..6591 (25 bp)
GCGGTCCTATGATTGCTAACTCTAT
LOC_Os08g01020
OsAffx.5673.1.S1_at--460--6592Chr08:6577..6601 (25 bp)
GATTGCTAACTCTATCAAACTCTTC
LOC_Os08g01020
OsAffx.5673.1.S1_at--54--2551Chr08:6594..6618 (25 bp)
AACTCTTCTTGGCTCAATGTGTTGA
LOC_Os08g01020
OsAffx.5673.1.S1_at--795--6051Chr08:6650..6674 (25 bp)
GAGATTGCAATGGTCAACATCCATC
LOC_Os08g01020
OsAffx.5673.1.S1_at--984--2491Chr08:6665..6689 (25 bp)
AACATCCATCAAGTCATTGTCGGTG
LOC_Os08g01020
OsAffx.5673.1.S1_at--105--2851Chr08:6675..6699 (25 bp)
AAGTCATTGTCGGTGATAGCAAAGC
LOC_Os08g01020
OsAffx.5673.1.S1_at--221--2371Chr08:6695..6719 (25 bp)
AAAGCCTACATCAACGATGCTCCAA
LOC_Os08g01020
OsAffx.5673.1.S1_at--202--2231Chr08:6718..6742 (25 bp)
AAATGTGGAAGCTCGTAGTCTTAAG
LOC_Os08g01020
OsAffx.5673.1.S1_at--43--9834Chr12:5305798..5305921 (25 bp)
TAAAAGGGCTCAAGTATGTCTCTAT
NONE
OsAffx.5673.1.S1_at--763--8811Chr08:7678..7702 (25 bp)
TGTTGACGAAAAATCTGTGCTCAGC
LOC_Os08g01020
Target Sequence 
TTCCAAATCTCATAAGCGGTCCTATGATTGCTAACTCTATCAAACTCTTCTTGGCTCAATGTGTTGATCAAGACATTCAT
GTCTTGGGCATTGAGTTGGAGATTGCAATGGTCAACATCCATCAAGTCATTGTCGGTGATAGCAAAGCCTACATCAACGA
TGCTCCAAATGTGGAAGCTCGTAGTCTTAAGAGTGATAAAAGGGCTCAAGTATGTCTCTATGAAAGTGTTGACGAAAAAT
CTGTGCTCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5673.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis