Browse Element(s) Details


OsAffx.6058.1.S1_at

Description tigr:9636.m03756
TID=OsAffx.6058.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3741010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37390Os.47947.1.A1_at11/118+23515166..23518230Cyclin, N-terminal domain containing protein, expressed
LOC_Os08g37400Os.18046.1.S1_at11/118+23530649..23532599ZF-HD protein dimerisation region containing protein, expressed
LOC_Os08g37410OsAffx.6058.1.S1_at10/118+23536122..23538314hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6058.1.S1_at--67--8091Chr08:23538246..23538270 (25 bp)
GGACGATCGGAGTGGTGCCGGTGTC
LOC_Os08g37410
OsAffx.6058.1.S1_at--296--911Chr08:23538202..23538226 (25 bp)
AGGCGGCGCCAGACGGATCCTACGC
LOC_Os08g37410
OsAffx.6058.1.S1_at--86--3431Chr08:23538193..23538217 (25 bp)
CAGACGGATCCTACGCATGGACGGC
LOC_Os08g37410
OsAffx.6058.1.S1_at--474--571Chr08:23538186..23538210 (25 bp)
ATCCTACGCATGGACGGCGGTGATA
LOC_Os08g37410
OsAffx.6058.1.S1_at--377--8471Chr08:23537833..23537857 (25 bp)
TGGCGCGGCGTGTGTGGCACCAGGA
LOC_Os08g37410
OsAffx.6058.1.S1_at--118--3291Chr08:23537816..23537840 (25 bp)
CACCAGGAGGGTTAGTTCGGGCGAT
LOC_Os08g37410
OsAffx.6058.1.S1_at--123--5891Chr08:23537766..23537790 (25 bp)
GAGCGGGAGGCTGACATCACCGACG
LOC_Os08g37410
OsAffx.6058.1.S1_at--390--7911NONE
GGTTGTGCAGCTACGTCGCATTTGA
NONE
OsAffx.6058.1.S1_at--1113--5051Chr08:23536205..23536227 (23 bp)
GCAGCTACGTCGCATTTGATTGAAG
LOC_Os08g37410
OsAffx.6058.1.S1_at--958--1891Chr08:23536199..23536223 (25 bp)
ACGTCGCATTTGATTGAAGTGAGAG
LOC_Os08g37410
OsAffx.6058.1.S1_at--772--9631Chr08:23536155..23536179 (25 bp)
TCAGGCTATGAGAGAGAGCTTCATC
LOC_Os08g37410
Target Sequence 
GGACGATCGGAGTGGTGCCGGTGTCGGGGTTGGCGCGCAGACGGAGGCGGCGCCAGACGGATCCTACGCATGGACGGCGG
TGATAGGCGGAGGTGGAGGCGGGGGCGGAGGAGACGACAAGTGGTGGGGTAGACCAAAGACGGTGGTGGTGGGGAGGTCA
TGGCTGCGGGAGGCTGGCGCGGCGTGTGTGGCACCAGGAGGGTTAGTTCGGGCGATGGCAAGGAGGCCGGCCCGCTCGAT
GGAGCGGGAGGCTGACATCACCGACGACAGGGGGGCCGGGGAGGCTGACTTGTGGGGTTGTGCAGCTACGTCGCATTTGA
TTGAAGTGAGAGTTATCCCCTCACCAGAAGATCAGGCTATGAGAGAGAGCTTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6058.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis