Browse Element(s) Details


OsAffx.6844.1.S1_at

Description tigr:9638.m02884
TID=OsAffx.6844.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative stachyose synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3307011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33040Os.46800.1.S1_a_at11/1110+16982871..16987487Leucine Rich Repeat family protein, expressed
LOC_Os10g33040Os.46800.1.S2_a_at11/1110+16982871..16987487Leucine Rich Repeat family protein, expressed
LOC_Os10g33050Os.56974.1.S1_at11/1110+16987465..16988532expressed protein
LOC_Os10g33060OsAffx.8033.1.S1_at11/1110+16990871..16992849Leucine Rich Repeat family protein
LOC_Os10g33070OsAffx.6844.1.S1_at11/1110+16995679..16996293hypothetical protein
LOC_Os10g33080OsAffx.20258.1.S1_at10/1110+17002072..17005527Leucine Rich Repeat family protein
LOC_Os10g33110Os.46543.2.S1_at5/1110+17017221..17020331Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6844.1.S1_at--188--10531Chr10:16995714..16995738 (25 bp)
TTCACCGCCTACTTCGTGGAGGCAC
LOC_Os10g33070
OsAffx.6844.1.S1_at--1161--4291Chr10:16995721..16995745 (25 bp)
CCTACTTCGTGGAGGCACGGAAGCG
LOC_Os10g33070
OsAffx.6844.1.S1_at--135--6731Chr10:16995852..16995876 (25 bp)
GTTCACCTACGAGCTCTTGTTGGAG
LOC_Os10g33070
OsAffx.6844.1.S1_at--1100--4291Chr10:16995857..16995881 (25 bp)
CCTACGAGCTCTTGTTGGAGCGGCG
LOC_Os10g33070
OsAffx.6844.1.S1_at--1100--1611Chr10:16995875..16995899 (25 bp)
AGCGGCGGATCAGCTTCGTGCCCAT
LOC_Os10g33070
OsAffx.6844.1.S1_at--1016--4491Chr10:16995931..16995955 (25 bp)
GCCGTGCAGGGCTTTCAGACAGTGA
LOC_Os10g33070
OsAffx.6844.1.S1_at--630--2871Chr10:16996003..16996027 (25 bp)
AAGGGTGCCAAGGAGGCATACTCGT
LOC_Os10g33070
OsAffx.6844.1.S1_at--168--4391Chr10:16996010..16996034 (25 bp)
CCAAGGAGGCATACTCGTCGGCGAG
LOC_Os10g33070
OsAffx.6844.1.S1_at--1045--1912Chr10:16996120..16996144 (25 bp)
ACGGAATCCGGCCTCGGCAAAGACG
LOC_Os10g33070
OsAffx.6844.1.S1_at--707--5131Chr10:16996136..16996160 (25 bp)
GCAAAGACGCGGCTGACGACCTTGA
LOC_Os10g33070
OsAffx.6844.1.S1_at--58--2773Chr10:16996139..16996163 (25 bp)
AAGACGCGGCTGACGACCTTGACGG
LOC_Os10g33070
Target Sequence 
TTCACCGCCTACTTCGTGGAGGCACGGAAGCGGTGGCGGCAACGGCGACGGTGTCGACTGCTTCACCGTCTACTTCGTGG
AGGCACAGAAGCTTCAGCTGCTCCGCCGCAACGAGTCCTTCGAGCTCACCCTCGAGCCGTTCACCTACGAGCTCTTGTTG
GAGCGGCGGATCAGCTTCGTGCCCATCGGCCTCGCCAACATGCTGAACGTCGGCGGCGCCGTGCAGGGCTTTCAGACAGT
GAAGAAGGACGACGGCGGCGGCGGTGATGTGGTGGCGGAGGTGGCGGTGAAGGGTGCCAAGGAGGCATACTCGTCGGCGA
GGCTGTGGGCGGGTGCGCGTGGGGAGGCGGCCGAGGAGCGGCATGGATGGAGCCGGGCGGAGGATGGTGAGCTTGATGTC
CCCGCTACGGAATCCGGCCTCGGCAAAGACGCGGCTGACGACCTTGACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6844.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis