Browse Element(s) Details


OsAffx.7197.1.S1_at

Description tigr:9639.m02247
TID=OsAffx.7197.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2530010/11hypothetical protein
LOC_Os05g343301/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25260Os.27696.1.S1_at11/1111+13889985..13897860GDA1/CD39 family protein, expressed
LOC_Os11g25270NANA11+13901872..13903632retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25280Os.7307.3.S1_x_at3/1111+13903987..13907971retrotransposon protein, putative, unclassified
LOC_Os11g25290NANA11+13909425..13912398retrotransposon protein, putative, unclassified
LOC_Os11g25300OsAffx.7197.1.S1_at10/1111+13912586..13913728hypothetical protein
LOC_Os11g25310NANA11+13919056..13920106hypothetical protein
LOC_Os11g25330Os.27696.1.S1_at7/1111+13926778..13930649GDA1/CD39 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7197.1.S1_at--380--4591Chr11:13912616..13912640 (25 bp)
GCGCAGCAGTTTTCGGACTACAATT
LOC_Os11g25300
OsAffx.7197.1.S1_at--309--8933Chr11:13956154..13956178 (25 bp)
TGACCGTTGAACTTCGTACAATGTT
NONE
OsAffx.7197.1.S1_at--39--5493Chr11:13956162..13956186 (25 bp)
GAACTTCGTACAATGTTATCGATAA
NONE
OsAffx.7197.1.S1_at--626--10155Chr11:13956178..13956202 (25 bp)
TATCGATAACTCTATGTCTCTACGG
NONE
OsAffx.7197.1.S1_at--392--9814Chr11:13956184..13956208 (25 bp)
TAACTCTATGTCTCTACGGTTCTCA
NONE
OsAffx.7197.1.S1_at--1000--754Chr11:13956191..13956215 (25 bp)
ATGTCTCTACGGTTCTCATACCGAG
NONE
OsAffx.7197.1.S1_at--460--6714Chr11:13956202..13956226 (25 bp)
GTTCTCATACCGAGATCGACCAGTT
NONE
OsAffx.7197.1.S1_at--207--4094Chr11:13956218..13956242 (25 bp)
CGACCAGTTGAGAGCGATAACGATT
NONE
OsAffx.7197.1.S1_at--770--5872Chr11:13956229..13956253 (25 bp)
GAGCGATAACGATTCCGACATCCGA
NONE
OsAffx.7197.1.S1_at--1134--9752Chr11:13956235..13956259 (25 bp)
TAACGATTCCGACATCCGAAGTCGC
NONE
OsAffx.7197.1.S1_at--986--44334Chr12:7049495..7050000 (25 bp)
GTTACGGATAAGATCCTCGTACCAG
NONE
Target Sequence 
GCGCAGCAGTTTTCGGACTACAATTTAAATTTACTCATGACCGTTGAACTTCGTACAATGTTATCGATAACTCTATGTCT
CTACGGTTCTCATACCGAGATCGACCAGTTGAGAGCGATAACGATTCCGACATCCGAAGTCGCGATCGGTCACATGAGTT
CATTTAAGCAGAATTCGGGGGTTACTGTTAGGGTTACGGATAAGATCCTCGTACCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7197.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis