Browse Element(s) Details


OsAffx.7517.1.S1_x_at

Description tigr:9640.m00687
TID=OsAffx.7517.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Plant disease resistance response protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0758011/11Dirigent-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07560NANA12+3776544..3777080hypothetical protein
LOC_Os12g07570OsAffx.19534.1.S1_at11/1112+3780628..3780907hypothetical protein
LOC_Os12g07580OsAffx.7517.1.S1_x_at11/1112+3788885..3789726Dirigent-like protein, expressed
LOC_Os12g07590Os.22971.1.S1_at11/1112+3791160..3796467Protein-tyrosine phosphatase containing protein, expressed
LOC_Os12g07590Os.55631.1.S1_at11/1112+3791160..3796467Protein-tyrosine phosphatase containing protein, expressed
LOC_Os12g07590Os.22971.2.S1_x_at11/1112+3791160..3796467Protein-tyrosine phosphatase containing protein, expressed
LOC_Os12g07600NANA12+3797756..3798058hypothetical protein
LOC_Os12g07610OsAffx.19535.1.S1_at11/1112+3799030..3800862myb family transcription factor, putative

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7517.1.S1_x_at--404--4491Chr12:3788971..3788995 (25 bp)
GCCGGAGCTGTCCATGCTGCCGCGG
LOC_Os12g07580
OsAffx.7517.1.S1_x_at--13--5791Chr12:3789009..3789033 (25 bp)
GACGACGACGCACATCAAGGTGTAC
LOC_Os12g07580
OsAffx.7517.1.S1_x_at--537--1071Chr12:3789082..3789106 (25 bp)
AGGGCAGCGACGACCAACTCGTCGG
LOC_Os12g07580
OsAffx.7517.1.S1_x_at--146--3991Chr12:3789224..3789248 (25 bp)
CGGTGGCGCTGCTCATGAACATGAA
LOC_Os12g07580
OsAffx.7517.1.S1_x_at--1097--5471Chr12:3789240..3789264 (25 bp)
GAACATGAACTTCGTCTTCCAGTCC
LOC_Os12g07580
OsAffx.7517.1.S1_x_at--286--9411Chr12:3789251..3789275 (25 bp)
TCGTCTTCCAGTCCGGCAGGTACAA
LOC_Os12g07580
OsAffx.7517.1.S1_x_at--1040--10631Chr12:3789256..3789280 (25 bp)
TTCCAGTCCGGCAGGTACAACGGCA
LOC_Os12g07580
OsAffx.7517.1.S1_x_at--848--3451Chr12:3789259..3789283 (25 bp)
CAGTCCGGCAGGTACAACGGCAGCA
LOC_Os12g07580
OsAffx.7517.1.S1_x_at--438--411Chr12:3789292..3789316 (25 bp)
ATCATGGGCCGCAACGAGGTCTTCG
LOC_Os12g07580
OsAffx.7517.1.S1_x_at--859--271Chr12:3789295..3789319 (25 bp)
ATGGGCCGCAACGAGGTCTTCGCCG
LOC_Os12g07580
OsAffx.7517.1.S1_x_at--465--3351Chr12:3789396..3789420 (25 bp)
CACCCTCGACATGAAGACCGGCGAC
LOC_Os12g07580
Target Sequence 
GCCGGAGCTGTCCATGCTGCCGCGGGGGAGACGACGGCGACGACGACGCACATCAAGGTGTACTGGCACGACGTGGTGAG
CGGGCCGAGCCCGACGGCGGTGCAGGTGGCGAGGGCAGCGACGACCAACTCGTCGGCGAGCTTCTTCGGCGCCGTGGTGG
TGATCGACGACCCGCTGACGTCGGGCCCCGACCTGAACGCCTCGTCGCCGGTGGGCCGCGCCCAGGGCACCTACGTCAGC
GCCGGCAAGGACACGGTGGCGCTGCTCATGAACATGAACTTCGTCTTCCAGTCCGGCAGGTACAACGGCAGCACCGTCGC
CATCATGGGCCGCAACGAGGTCTTCGCCGCCGTCCGCGAGATGGCCGTCGTCGGCGGCACCGGCGTCTTCCGGTGGGCCC
GCGGCTACGCCCAGGCCCGGACCCACACCCTCGACATGAAGACCGGCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7517.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis