Browse Element(s) Details


OsAffx.7561.1.S1_at

Description tigr:9640.m01165
TID=OsAffx.7561.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1219011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12160NANA12+6664052..6670208transposon protein, putative, unclassified
LOC_Os12g12170Os.18642.1.S1_x_at11/1112+6676547..6678644Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os12g12170Os.18642.2.S1_at9/1112+6676547..6678644Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os12g12180OsAffx.19542.3.S1_x_at3/1112+6679990..6686756retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12180OsAffx.21754.1.S1_x_at1/1112+6679990..6686756retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12180OsAffx.9949.1.S1_at1/1112+6679990..6686756retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12190OsAffx.7561.1.S1_at11/1112+6688496..6691362hypothetical protein
LOC_Os12g12200Os.47463.1.S1_x_at6/1112+6695684..6699381transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g12200Os.14491.2.S1_x_at5/1112+6695684..6699381transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g12210NANA12+6702547..6705879transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g12220OsAffx.19623.1.S1_x_at11/1112+6709871..6711004hypothetical protein
LOC_Os12g12230OsAffx.19624.1.S1_at6/1112+6714309..6716015expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7561.1.S1_at--843--10391Chr12:6689443..6689467 (25 bp)
TTTTGCTGGTAGCTCATTGCTTGAA
LOC_Os12g12190
OsAffx.7561.1.S1_at--491--10651Chr12:6689395..6689419 (25 bp)
TTCCCTGTCATTTTTACTTCCTGAA
LOC_Os12g12190
OsAffx.7561.1.S1_at--808--5731Chr12:6689326..6689350 (25 bp)
GACGGAACAATCTGTCTCCAAGGAT
LOC_Os12g12190
OsAffx.7561.1.S1_at--825--10411Chr12:6689214..6689238 (25 bp)
TTATTGCTTGTGCAATCTTCGGCAC
LOC_Os12g12190
OsAffx.7561.1.S1_at--267--3071Chr12:6689201..6689225 (25 bp)
AATCTTCGGCACAGATCGTTCCAAG
LOC_Os12g12190
OsAffx.7561.1.S1_at--585--8791Chr12:6689156..6689180 (25 bp)
TGTTCAGGTGCAACCAAGTTCGACT
LOC_Os12g12190
OsAffx.7561.1.S1_at--807--6491Chr12:6689067..6689091 (25 bp)
GATAGCAGCAGTTTTCAAGGCATGA
LOC_Os12g12190
OsAffx.7561.1.S1_at--99--5551Chr12:6689016..6689040 (25 bp)
GAAACTTCTGCAATTCAGGAGGCTA
LOC_Os12g12190
OsAffx.7561.1.S1_at--27--10831Chr12:6688980..6689004 (25 bp)
TTGGAGAAGAACTGGCCCTGGGATC
LOC_Os12g12190
OsAffx.7561.1.S1_at--746--1531Chr12:6688939..6688963 (25 bp)
AGCATCTCCTCAATGTCGGCAAGGG
LOC_Os12g12190
OsAffx.7561.1.S1_at--85--1071Chr12:6688918..6688942 (25 bp)
AGGGTACCATCCTTTGGATCGACTT
LOC_Os12g12190
Target Sequence 
TTTTGCTGGTAGCTCATTGCTTGAAAATCTAGCTTTGCAAGGGGATGATTCCCTGTCATTTTTACTTCCTGAAGGGGTCA
CTGTAGAAGATCAAGAAATGGTGACTCGGATTAAGATGACGGAACAATCTGTCTCCAAGGATGAAATGGATGGACCAAAG
CTTGGTGTTGCCAAGTTCAGTTTGGATAAATTACCAAATCATTCAGTTGGAAGTATCATGGCTATGGCATTATTGCTTGT
GCAATCTTCGGCACAGATCGTTCCAAGCTCCATCTTGGAGATGGGTTTGTTCAGGTGCAACCAAGTTCGACTTCAGATTG
AAAATTCAATATTTTCAGCAAGTTGTTTCATGAGCATGCATTTTCAAATGAGAAATGATAGCAGCAGTTTTCAAGGCATG
AAGGAGAAACAAACTGTTGATATTGTGGAAACTTCTGCAATTCAGGAGGCTATAGTTATTGAGTTGGAGAAGAACTGGCC
CTGGGATCCTGGTGTTTCCAGTTCAGCATCTCCTCAATGTCGGCAAGGGTACCATCCTTTGGATCGACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7561.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis