Browse Element(s) Details


OsAffx.7700.1.S1_x_at

Description tigr:9640.m02465
TID=OsAffx.7700.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2577011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25734NANA12+14920973..14924804retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25750OsAffx.7699.1.S1_at11/1112+14926760..14927694hypothetical protein
LOC_Os12g25760NANA12+14930534..14931309hypothetical protein
LOC_Os12g25770OsAffx.7700.1.S1_at11/1112+14942532..14942807hypothetical protein
LOC_Os12g25770OsAffx.7700.1.S1_x_at11/1112+14942532..14942807hypothetical protein
LOC_Os12g25790NANA12+14956616..14957188transposon protein, putative, unclassified
LOC_Os12g25800NANA12+14960408..14961037hypothetical protein
LOC_Os12g25810NANA12+14965041..14965723hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7700.1.S1_x_at--631--1851Chr12:14942713..14942737 (25 bp)
ACGACAGCAAGGTGGCCGGCTTGTC
LOC_Os12g25770
OsAffx.7700.1.S1_x_at--169--3951Chr12:14942697..14942721 (25 bp)
CGGCTTGTCGTCTCCAGTAGTGACA
LOC_Os12g25770
OsAffx.7700.1.S1_x_at--207--3451Chr12:14942683..14942707 (25 bp)
CAGTAGTGACAGTCGTCGTCGAGAA
LOC_Os12g25770
OsAffx.7700.1.S1_x_at--220--7211Chr12:14942630..14942690 (25 bp)
GTCGAGAAGGAGTGCTACCCATCCC
LOC_Os12g25770
OsAffx.7700.1.S1_x_at--969--5951Chr12:14942627..14942687 (25 bp)
GAGAAGGAGTGCTACCCATCCCGGT
LOC_Os12g25770
OsAffx.7700.1.S1_x_at--233--5311Chr12:14942625..14942685 (25 bp)
GAAGGAGTGCTACCCATCCCGGTTG
LOC_Os12g25770
OsAffx.7700.1.S1_x_at--1145--971Chr12:14942623..14942683 (25 bp)
AGGAGTGCTACCCATCCCGGTTGCT
LOC_Os12g25770
OsAffx.7700.1.S1_x_at--930--531Chr12:14942610..14942634 (25 bp)
ATCCCGGTTGCTCCTCGAGACAGCG
LOC_Os12g25770
OsAffx.7700.1.S1_x_at--452--3971Chr12:14942606..14942630 (25 bp)
CGGTTGCTCCTCGAGACAGCGGTGA
LOC_Os12g25770
OsAffx.7700.1.S1_x_at--1018--10711Chr12:14942603..14942627 (25 bp)
TTGCTCCTCGAGACAGCGGTGAGGA
LOC_Os12g25770
OsAffx.7700.1.S1_x_at--537--2951Chr12:14942567..14942591 (25 bp)
AAGGCGACGCTCTTCGTCAACGTCA
LOC_Os12g25770
Target Sequence
ACGACAGCAAGGTGGCCGGCTTGTCGTCTCCAGTAGTGACAGTCGTCGTCGAGAAGGAGTGCTACCCATCCCGGTTGCTC
CTCGAGACAGCGGTGAGGAAGGATGAGAGCAAGGCGACGCTCTTCGTCAACGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7700.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis