Browse Element(s) Details


OsAffx.7802.1.S1_at

Description tigr:9640.m03484
TID=OsAffx.7802.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3598010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35950Os.42032.1.S1_at5/1112+21939568..21942444transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35960OsAffx.15798.1.S1_at8/1112+21947961..21948917retrotransposon protein, putative, unclassified
LOC_Os12g35970OsAffx.30582.1.S1_s_at2/1112+21954707..21959077transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35970Os.47463.1.S1_x_at1/1112+21954707..21959077transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35980OsAffx.7802.1.S1_at10/1112+21961627..21963489hypothetical protein
LOC_Os12g35990OsAffx.32046.1.S1_x_at11/1112+21969403..21969894hypothetical protein
LOC_Os12g35990OsAffx.32046.1.S1_at11/1112+21969403..21969894hypothetical protein
LOC_Os12g36000OsAffx.32047.1.S1_at11/1112+21976965..21978745hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7802.1.S1_at--10--4191Chr12:21961658..21961682 (25 bp)
CCCTTGTGGATCCAGTGGGCAACGA
LOC_Os12g35980
OsAffx.7802.1.S1_at--842--1471Chr12:21961726..21961750 (25 bp)
AGCAACTACGGCTCTTGTGGAACCA
LOC_Os12g35980
OsAffx.7802.1.S1_at--433--3611Chr12:21961739..21961763 (25 bp)
CTTGTGGAACCAGCAGGCAACGACA
LOC_Os12g35980
OsAffx.7802.1.S1_at--743--5151Chr12:21961755..21961779 (25 bp)
GCAACGACACGATGACCTCAGCGAT
LOC_Os12g35980
OsAffx.7802.1.S1_at--395--8351Chr12:21961789..21961813 (25 bp)
GGCGGCGATGATGACAACCTCGACG
LOC_Os12g35980
OsAffx.7802.1.S1_at--711--2611Chr12:21961804..21961828 (25 bp)
AACCTCGACGGCAATGGTCCGAGTG
LOC_Os12g35980
OsAffx.7802.1.S1_at--911--8851Chr12:21962062..21962082 (21 bp)
TGATGACACCCGATGAGCCCCAACA
LOC_Os12g35980
OsAffx.7802.1.S1_at--416--2131Chr12:21962080..21962104 (25 bp)
ACAGGGCCAGCCAGAACATTCTAAT
LOC_Os12g35980
OsAffx.7802.1.S1_at--600--10751NONE
TTGAGCATTTACTGCGAGAACAATT
NONE
OsAffx.7802.1.S1_at--1105--10091Chr12:21963387..21963411 (25 bp)
TATGGTATCCAGTGATCTCCGTGAC
LOC_Os12g35980
OsAffx.7802.1.S1_at--300--471Chr12:21963401..21963425 (25 bp)
ATCTCCGTGACTCCGTGTGCTTTGT
LOC_Os12g35980
Target Sequence 
CCCTTGTGGATCCAGTGGGCAACGACGACAATAACGACGTCGATGGCGATGGGCTGGGTGGATTGAGCAGCAACTACGGC
TCTTGTGGAACCAGCAGGCAACGACACGATGACCTCAGCGATGACAACCCCGGCGGCGATGATGACAACCTCGACGGCAA
TGGTCCGAGTGGATCTAGTGGGCTAGGGTTTTGGGTGATGACACCCGATGAGCCCCAACAGGGCCAGCCAGAACATTCTA
ATTACATTGAGCATTTACTGCGAGAACAATTAAGACGAGGAAGAGCAGAGATTATGGTATCCAGTGATCTCCGTGACTCC
GTGTGCTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis