Browse Element(s) Details


OsAffx.8275.1.S1_at

Description gb:NM_195801.1
DB_XREF= gi:37532961
TID=OsAffx.8275.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OJ1325D05.14), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1886011/11retrotransposon protein, putative, unclassified
LOC_Os08g397107/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g357406/11retrotransposon protein, putative, unclassified
LOC_Os01g358901/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18830OsAffx.266.1.S1_at11/1110+9253893..9257475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18840OsAffx.265.1.S1_at11/1110+9259382..9264262transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18840OsAffx.8264.1.S1_at3/1110+9259382..9264262transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18850OsAffx.20513.1.S1_at11/1110+9275834..9276787hypothetical protein
LOC_Os10g18860OsAffx.8275.1.S1_at11/1110+9279141..9283366retrotransposon protein, putative, unclassified
LOC_Os10g18870Os.18378.1.S1_at11/1110+9285325..9286797dirigent, putative, expressed
LOC_Os10g18870Os.18378.1.S1_s_at11/1110+9285325..9286797dirigent, putative, expressed
LOC_Os10g18870OsAffx.30449.1.S1_at11/1110+9285325..9286797dirigent, putative, expressed
LOC_Os10g18880OsAffx.30450.1.S1_at11/1110+9290488..9292203hypothetical protein
LOC_Os10g18890Os.46466.1.S1_at11/1110+9293329..9297181HNH endonuclease family protein, expressed
LOC_Os10g18899NANA10+9298318..9298518NA
LOC_Os10g18910OsAffx.10645.1.S1_at3/1110+9300481..9300798hypothetical protein
LOC_Os10g18920OsAffx.30451.1.S1_s_at8/1110+9301534..9302038hypothetical protein
LOC_Os10g18920OsAffx.30451.3.S1_x_at2/1110+9301534..9302038hypothetical protein
LOC_Os10g18930OsAffx.25917.1.S1_at1/1110+9306154..9307068hypothetical protein
LOC_Os10g18930OsAffx.22629.1.S1_at1/1110+9306154..9307068hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8275.1.S1_at--1002--8635Chr01:20196542..20196566 (25 bp)
TGGGAATTTCTGTCACTCGATCTGC
LOC_Os01g35890
OsAffx.8275.1.S1_at--386--774Chr11:20479256..20479280 (25 bp)
ATGTCGGAGTGTCATCCTACTGCAA
LOC_Os11g35740
OsAffx.8275.1.S1_at--1003--5134Chr11:20479235..20479259 (25 bp)
GCAACACCGGTTGATGCTCGATGTA
LOC_Os11g35740
OsAffx.8275.1.S1_at--1051--1833Chr10:9279461..9279485 (25 bp)
ACGCGGCCTGAGATAGCTTATGCAA
LOC_Os10g18860
OsAffx.8275.1.S1_at--455--4932Chr10:20441263..20441287 (25 bp)
GCTTGTTTATGCATGATCCCCGTGA
NONE
OsAffx.8275.1.S1_at--87--4474Chr11:20479065..20479089 (25 bp)
GCCTCATCTTGCTCTAGTTAAACGG
LOC_Os11g35740
OsAffx.8275.1.S1_at--221--7851Chr10:9279356..9279380 (25 bp)
GGTACTCTACACATTTGTCTTCACA
LOC_Os10g18860
OsAffx.8275.1.S1_at--482--2532Chr10:20441166..20441190 (25 bp)
AACTGCACCAGTTGACTCTTTGACA
NONE
OsAffx.8275.1.S1_at--465--111Chr10:9279268..9279292 (25 bp)
ATTCTCGTCATTCCACATCAGGGTA
LOC_Os10g18860
OsAffx.8275.1.S1_at--300--8954Chr11:20478894..20478918 (25 bp)
TGAAAACTTGGTCTCATGGTCCTCC
LOC_Os11g35740
OsAffx.8275.1.S1_at--1090--1954Chr11:20478857..20478881 (25 bp)
ACTGTCTCTCGATCTAGTGCTGAAG
LOC_Os11g35740
Target Sequence 
TGGGAATTTCTGTCACTCGATCTGCAGACGGTTTATTTCTTTCTCAGTGGCAATATGCTGTTGACTTATTGCGGCGAGCT
GGTATGTCGGAGTGTCATCCTACTGCAACACCGGTTGATGCTCGATGTAAACTTTCTGCTACAGATGGAGCTCCCGTTTC
AGATCCTATGGAGTACAGGAGTCTAGCTGGGGCTCTTCAGTACCTTACTCTCACGCGGCCTGAGATAGCTTATGCAATTC
AGCAGGTATGCTTGTTTATGCATGATCCCCGTGAGCCTCATCTTGCTCTAGTTAAACGGATTTTGCGTTACATCAAGGGT
ACTCTACACATTTGTCTTCACATCGGAACTGCACCAGTTGACTCTTTGACAGCTTATTCTGATGCTGACTGGGTGGGTTG
TCCTGATTCTCGTCATTCCACATCAGGGTATTGTGTTTTCCTCGGTGAAAACTTGGTCTCATGGTCCTCCAAGCGACAGA
CCACTGTCTCTCGATCTAGTGCTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8275.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis