Browse Element(s) Details


Os.10063.1.S1_at

Description gb:AK121917.1
DB_XREF= gi:37991540
TID=Os.10063.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10063 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033106C20, full insert sequence.
FL= gb:AK100786.1 gb:AK121917.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1401011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13970Os.51904.1.S1_at11/115+7754764..7760288Phosphorylase family protein, expressed
LOC_Os05g13980NANA5+7764401..7764640hypothetical protein
LOC_Os05g13990NANA5+7767619..7770923transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14000Os.14491.2.S1_x_at5/115+7773573..7777273transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14000Os.47463.1.S1_x_at5/115+7773573..7777273transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14010Os.10063.1.S1_at11/115+7782000..7789701expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10063.1.S1_at--95--10811Chr05:7782476..7782500 (25 bp)
TTGGGTGCAGGAGTAACGTCGTCAT
LOC_Os05g14010
Os.10063.1.S1_at--613--7031Chr05:7782464..7782488 (25 bp)
GTAACGTCGTCATAACATCATGAGC
LOC_Os05g14010
Os.10063.1.S1_at--1103--3551Chr05:7782449..7782473 (25 bp)
CATCATGAGCAGTCATTCTCTGGTA
LOC_Os05g14010
Os.10063.1.S1_at--521--9971Chr05:7782413..7782437 (25 bp)
TACCTGTAAGGTTGATTGCTCTTGA
LOC_Os05g14010
Os.10063.1.S1_at--981--5991Chr05:7782304..7782328 (25 bp)
GAGACCTTGCAAAAGTTGATGCCCC
LOC_Os05g14010
Os.10063.1.S1_at--24--7371Chr05:7782246..7782270 (25 bp)
GTGAACACTTTGCTCATACTACCGT
LOC_Os05g14010
Os.10063.1.S1_at--9--9911Chr05:7782230..7782254 (25 bp)
TACTACCGTGCTTTGATTTATCATC
LOC_Os05g14010
Os.10063.1.S1_at--862--7071Chr05:7782179..7782203 (25 bp)
GTCAATATTCCGTCAGTTGCTCGGC
LOC_Os05g14010
Os.10063.1.S1_at--405--10691Chr05:7782163..7782187 (25 bp)
TTGCTCGGCTGGTGTATGTAGGAAA
LOC_Os05g14010
Os.10063.1.S1_at--743--4051Chr05:7782046..7782070 (25 bp)
CGATGTTGCTGAATTATTTGTGTGC
LOC_Os05g14010
Os.10063.1.S1_at--140--7931Chr05:7782011..7782035 (25 bp)
GGATTTTCTGTATGTCAATCGACAG
LOC_Os05g14010
Target Sequence 
TTGGGTGCAGGAGTAACGTCGTCATAACATCATGAGCAGTCATTCTCTGGTAAGAAAAAAAATTACCTGTAAGGTTGATT
GCTCTTGATGCTATGGGAGTGAGAGGTAGCTAGCTATAGTATAATTAATTAAGCTTCTGGATCTGCAAATTAAGAAGCTT
CAGTTCAAGAAGGAGACCTTGCAAAAGTTGATGCCCCCTTTGATATGTATATGTAAAATCTAGCAAGTNAGTGAACACTT
TGCTCATACTACCGTGCTTTGATTTATCATCAGAAGCAGAAAAGCTTGCGCGGTAGTGTCAATATTCCGTCAGTTGCTCG
GCTGGTGTATGTAGGAAATTAAAGTTGATATCCCATATCACATATATGTATATTGACAGTTAATTTGTATCAGTTATTTA
CTGAGTTAAGTCAGCAATATTATTTGTCTTCGATGTTGCTGAATTATTTGTGTGCATCTATATATGGATTTTCTGTATGT
CAATCGACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10063.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis