Browse Element(s) Details


Os.51904.1.S1_at

Description gb:AK064229.1
DB_XREF= gi:32974247
TID=Os.51904.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51904 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033055L05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-H04, full insert sequence.
FL= gb:AK064229.1 gb:AK101642.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1397011/11Phosphorylase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13950Os.10033.1.S1_at11/115+7741418..7747624Eukaryotic translation initiation factor 3 subunit 6 interactingprotein, putative, expressed
LOC_Os05g13960Os.57135.1.S1_at11/115+7747779..7749727transposon protein, putative, Pong sub-class, expressed
LOC_Os05g13970Os.51904.1.S1_at11/115+7754764..7760288Phosphorylase family protein, expressed
LOC_Os05g13980NANA5+7764401..7764640hypothetical protein
LOC_Os05g13990NANA5+7767619..7770923transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14000Os.14491.2.S1_x_at5/115+7773573..7777273transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14000Os.47463.1.S1_x_at5/115+7773573..7777273transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14010Os.10063.1.S1_at11/115+7782000..7789701expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009116biological_processnucleoside metabolism
GO:0003824molecular_functioncatalytic activity
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51904.1.S1_at--1055--1151Chr05:7755325..7755349 (25 bp)
AGTCTCGCCGCCACGAGTTCTGGGT
LOC_Os05g13970
Os.51904.1.S1_at--1054--7831Chr05:7755286..7755310 (25 bp)
GGTACTACCAGCTCGCCCAGAAGCT
LOC_Os05g13970
Os.51904.1.S1_at--970--5871Chr05:7755245..7755269 (25 bp)
GAGCGCTGCGTCAACCGCACCGGGA
LOC_Os05g13970
Os.51904.1.S1_at--379--4551Chr05:7755154..7755178 (25 bp)
GCGCCAGCGTGTTCGTGGACAACGC
LOC_Os05g13970
Os.51904.1.S1_at--592--2211Chr05:7755136..7755160 (25 bp)
ACAACGCGGCGTACAGGCAGTTCCT
LOC_Os05g13970
Os.51904.1.S1_at--119--6391Chr05:7755087..7755111 (25 bp)
GATCGACATGGAGTCGGCCGCCGTC
LOC_Os05g13970
Os.51904.1.S1_at--959--4491Chr05:7754927..7754951 (25 bp)
GCCGTCAAGTTCATATCGCTCTTAA
LOC_Os05g13970
Os.51904.1.S1_at--46--9351Chr05:7754912..7754936 (25 bp)
TCGCTCTTAAGCTAAGAAGCTGTCT
LOC_Os05g13970
Os.51904.1.S1_at--87--5391Chr05:7754897..7754921 (25 bp)
GAAGCTGTCTTAACCATCGTCGATG
LOC_Os05g13970
Os.51904.1.S1_at--1139--5311Chr05:7754834..7754858 (25 bp)
GAAGTGTTACCTCGTGTGTTGTTCA
LOC_Os05g13970
Os.51904.1.S1_at--276--9691Chr05:7754812..7754836 (25 bp)
TCACGATAGACGTTATTGTTCTGAT
LOC_Os05g13970
Target Sequence 
AGTCTCGCCGCCACGAGTTCTGGGTCCCCGTCGACGGCCGGTACTACCAGCTCGCCCAGAAGCTGGAGGCGATGCCGCTG
GAGCGCTGCGTCAACCGCACCGGGACGGCGACGTCGCCGGCGACGTGCCTGGCGCGGGCGCCGGCGGTGGCGCGCGTGGA
GCGCGGGTGCAGCGCCAGCGTGTTCGTGGACAACGCGGCGTACAGGCAGTTCCTGCGGTCCAGGCTGGGCGTGACGCCGA
TCGACATGGAGTCGGCCGCCGTCGCGCTGGTGGCGGCGCAGCAGGGGGCGCCGTTCATCGCCATACGGTCGCTCTCCGAC
CTCGCCGGCGGCGGCTCCGCGGAGTCCAACGAGGCCGGCGTGTTCGCGGCGCTGGCGGCGCAGAACGCGGTGGCCGTCGC
CGTCAAGTTCATATCGCTCTTAAGCTAAGAAGCTGTCTTAACCATCGTCGATGAAGGTTGAGAATGATAACCCTATAATG
GTAATTAATTAGAAGTGTTACCTCGTGTGTTGTTCACGATAGACGTTATTGTTCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51904.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis